Align Maleylacetoacetate isomerase (EC 5.2.1.2) (characterized)
to candidate GFF38 PGA1_c00380 putative maleylacetoacetate isomerase
Query= reanno::MR1:200836 (216 letters) >FitnessBrowser__Phaeo:GFF38 Length = 228 Score = 162 bits (410), Expect = 5e-45 Identities = 96/219 (43%), Positives = 132/219 (60%), Gaps = 16/219 (7%) Query: 1 MILYGYWRSSAAYRVRIALNLKGVSAEQLSVHLVRDGGEQHKADYIALNPQELVPTLVVD 60 +ILY YWRSSA+YRVRIALNL G+S ++V LV+ GEQ D++A NPQ LVP L Sbjct: 4 VILYDYWRSSASYRVRIALNLAGISYRAVTVDLVK--GEQVSPDHLARNPQGLVPVL--- 58 Query: 61 DEQDGDALTQSLAIIEYLDELYPKTPLLPASALERAHVRAMALTIACEIHPLNNLRVLQY 120 E DG LTQSLAI++YLD+ LLP + ERA +A+A IA ++HP+ NL+V ++ Sbjct: 59 -EIDGLRLTQSLAILDYLDQTR-HLDLLPRTPAERALAQALAHAIAVDLHPVCNLKVARH 116 Query: 121 LTQKLTVNEEAKSA--------WYHHWVATGFTALETQLVRHS-GRYCFGDKVTIADLCL 171 + T + + +A W H++ G A T L H YC GD +ADLCL Sbjct: 117 ASDLCTGSAASPAAQPVDMPADWMRHFIRPGLVAFNTLLEEHPVAPYCTGDHPGLADLCL 176 Query: 172 VPQVYNAQRFNVDLTPYPNIMRVWAECNQLPAFADAAPE 210 +PQ+YNA+R+ V+ P ++ + C PAFA A P+ Sbjct: 177 IPQLYNARRWGVNFDDLPRLVTIETTCAGNPAFAMAHPD 215 Lambda K H 0.321 0.134 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 166 Number of extensions: 9 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 216 Length of database: 228 Length adjustment: 22 Effective length of query: 194 Effective length of database: 206 Effective search space: 39964 Effective search space used: 39964 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 45 (21.9 bits)
Align candidate GFF38 PGA1_c00380 (putative maleylacetoacetate isomerase)
to HMM TIGR01262 (maiA: maleylacetoacetate isomerase (EC 5.2.1.2))
../bin/blast/fastacmd -i /tmp/list.18160.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18160.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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