GapMind for catabolism of small carbon sources

 

Alignments for a candidate for pta in Pseudomonas putida KT2440

Align Phosphate acetyltransferase; Phosphotransacetylase; EC 2.3.1.8 (characterized)
to candidate PP_0774 PP_0774 Phosphate acetyltransferase

Query= SwissProt::Q9I5A5
         (704 letters)



>FitnessBrowser__Putida:PP_0774
          Length = 695

 Score = 1054 bits (2726), Expect = 0.0
 Identities = 544/699 (77%), Positives = 608/699 (86%), Gaps = 9/699 (1%)

Query: 1   MHTFFIAPTGFGVGLTSISLGLLRALERAGLKVGFFKPIAQLHPGDLGPERSSELVARTH 60
           M TFFIAPT FGVGLTSISLGL+R LERAGLKVGFFKPIAQ HPGD GPERS+ELVARTH
Sbjct: 1   MQTFFIAPTDFGVGLTSISLGLVRTLERAGLKVGFFKPIAQPHPGDTGPERSTELVARTH 60

Query: 61  GLDTPKPLPLAQVERMLGDGQLDELLEEIISLYQRAAADKDVVIVEGMVPTRHASYAARV 120
           G+  P PL LA VERMLGDGQLDELLEEII LYQ+A    DVV+VEGMVPTRHASYAARV
Sbjct: 61  GIKPPVPLSLAHVERMLGDGQLDELLEEIIRLYQQACVGNDVVVVEGMVPTRHASYAARV 120

Query: 121 NFHLAKSLDAEVILVSAPENETLTELTDRIEIQAQLFGGPRDPKVLGVILNKVRGEADAA 180
           N HLAKSLDAEVILVSAPENE L+EL+ R+E+QAQLFGGPRDPKVLGVILNKVR      
Sbjct: 121 NLHLAKSLDAEVILVSAPENEVLSELSGRVELQAQLFGGPRDPKVLGVILNKVR------ 174

Query: 181 NAEDGVADFARRLTEHSPLLR-DDFRLIGCIPWQDELNAARTRDIADLLSARVINAGDYE 239
             ++ +ADFA RL EHSPLLR +DFRL+GCIP+Q ELNA RTRD+A+LL A+V+NAGDYE
Sbjct: 175 -TDESMADFATRLREHSPLLRGNDFRLLGCIPYQPELNAPRTRDVAELLGAQVLNAGDYE 233

Query: 240 QRRVQKIVLCARAVPNTVQLLKPGVLVVTPGDRDDIILAASLAAMNGVPLAGLLLCSDFP 299
           QRR+ KI++CAR V NTV LL  G LVVTPGDRDDIILA SLAA+NGVPLAGLLL SD  
Sbjct: 234 QRRMSKIIICARTVANTVPLLTSGTLVVTPGDRDDIILAVSLAAINGVPLAGLLLTSDSK 293

Query: 300 PDPRIMELCRGALQGGLPVLSVATGSYDTATNLNRMNKEIPVDDRERAERVTEFVAGHID 359
           PD RI+ LCRGALQ GLP+LSV+TGSYDTA  LN +N+EIPVDDRERAE +T+FVA H+D
Sbjct: 294 PDVRILGLCRGALQAGLPILSVSTGSYDTANQLNSLNREIPVDDRERAEFITDFVASHLD 353

Query: 360 FEWLKQRCGTPRELRLSPPAFRYQVVQRAQKAGKRIVLPEGSEPRTVQAAAICQARGIAR 419
             WL QRCGTPRELRLSP  FRYQ++QRAQ+A KRIVLPEG+EP  VQAAAICQARGIAR
Sbjct: 354 AAWLHQRCGTPRELRLSPAVFRYQLIQRAQQANKRIVLPEGAEPLLVQAAAICQARGIAR 413

Query: 420 CVLLAKPEEVQAVAQAQGIVLPEGLEIIDPDLVRQRYVEPMVELRKGKGLNAPMAEQQLE 479
           CVLLAKPE+V AVA+AQGI LP GLEI+DP+L+R RYVEPMVELRK K LNAPMAEQQLE
Sbjct: 414 CVLLAKPEDVDAVARAQGITLPPGLEILDPELIRGRYVEPMVELRKSKNLNAPMAEQQLE 473

Query: 480 DSVVLATMMLALDEVDGLVSGAIHTTASTIRPALQLIKTAPGYNLVSSVFFMLLPDQVLV 539
           D VV+ TMMLALDEVDGLVSG +H+TA+TIRPALQLIKTAPG +LVSSVFFML P+QVLV
Sbjct: 474 DPVVIGTMMLALDEVDGLVSGLVHSTANTIRPALQLIKTAPGSSLVSSVFFMLFPEQVLV 533

Query: 540 YGDCAVNPDPSASDLAEIAVQSAASAQAFGIPARVAMISYSTGDSGSGVDVDKVREATRL 599
           YGDC +NP PSA++LAEIA QSAASAQAFGI  RVAMISYS+ DS S  +V+KVREATRL
Sbjct: 534 YGDCVMNPHPSAAELAEIAQQSAASAQAFGIAPRVAMISYSS-DSASDEEVEKVREATRL 592

Query: 600 AREQRPDLLIDGPLQYDAAAIASVGRQKAPNSPVAGQATVFIFPDLNTGNTTYKAVQRSA 659
           A++   +LLIDGPLQYDAAA  ++ R+ AP SPVAG+ATVF+FPDLNTGNTT+KAVQRSA
Sbjct: 593 AQDAAQELLIDGPLQYDAAANPAIARELAPASPVAGRATVFVFPDLNTGNTTHKAVQRSA 652

Query: 660 DCVSVGPMLQGLRKPVNDLSRGALVEDIVYTIALTAIQA 698
           D VS+GPMLQGLRKPVNDL RGA V+DIV+TIALTAIQA
Sbjct: 653 DGVSLGPMLQGLRKPVNDLPRGAQVDDIVHTIALTAIQA 691


Lambda     K      H
   0.319    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1387
Number of extensions: 56
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 695
Length adjustment: 39
Effective length of query: 665
Effective length of database: 656
Effective search space:   436240
Effective search space used:   436240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)

Align candidate PP_0774 PP_0774 (Phosphate acetyltransferase)
to HMM TIGR00651 (pta: phosphate acetyltransferase (EC 2.3.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.1742.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1742.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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