Align 1-phosphofructokinase (EC 2.7.1.56) (characterized)
to candidate PP_0794 PP_0794 1-phosphofructokinase monomer
Query= reanno::pseudo5_N2C3_1:AO356_07330 (313 letters) >FitnessBrowser__Putida:PP_0794 Length = 315 Score = 412 bits (1059), Expect = e-120 Identities = 214/313 (68%), Positives = 242/313 (77%), Gaps = 3/313 (0%) Query: 1 MAKILTLTLNPALDLTVELARLEPGQVNRSDAMHAHAAGKGVNVAQVLADLGHTLTVSGF 60 MAKILTLTLNPALD+T+ L L PGQVNRS A H+HAAGKG+NVAQVLADLGH++TV GF Sbjct: 1 MAKILTLTLNPALDITIGLDTLRPGQVNRSQAQHSHAAGKGLNVAQVLADLGHSVTVGGF 60 Query: 61 LGEDNAQVFETLFAQRGFVDAFIRVPGETRSNIKLAEQDGRITDLNGPGPMVDAAAQQAL 120 LG DN Q FE L RGF D F+RVPGETRSNIKL E DGR+TD+NG GP VD AA+ AL Sbjct: 61 LGGDNLQPFEALIDGRGFTDCFVRVPGETRSNIKLVEADGRVTDINGQGPEVDEAARSAL 120 Query: 121 LARLEQIAPGHDVVVVAGSLPRGVSPQWLQALIARMKALGLNVALDTSGEALRVALAAGP 180 L RLEQIAPGHD VVVAGSLPRG+S W + L+ R+KA GL V LD+SGEALRV L + P Sbjct: 121 LHRLEQIAPGHDAVVVAGSLPRGISADWFRQLLERLKAQGLKVVLDSSGEALRVGLQSAP 180 Query: 181 WLIKPNTEELADALGCEVVSETAQAQAAQRLHAQGIEHVVISHGADGVNWFSVGAALHAS 240 WL+KPNTEEL + LG V + T Q AA+RL G+EHVV+S G GV+WFS AL A Sbjct: 181 WLVKPNTEELGEVLGLAVDNLTQQRAAAKRLLDSGVEHVVVSAGEQGVSWFSRDLALQAR 240 Query: 241 PPKVSVASTVGAGDSLLAGMLHGLLSADTPEQTLRTATAIAAMAVTQIGFGIHDTALLAS 300 PPKV VASTVGAGDSL+AGM+HGLL A+ P QTL ATAIAA AVTQ+GFGIHD LA Sbjct: 241 PPKVRVASTVGAGDSLVAGMVHGLLLAEAPAQTLTRATAIAAQAVTQVGFGIHDREHLAQ 300 Query: 301 LEQGVRVRPLTEQ 313 LE V+ LTEQ Sbjct: 301 LEAAVQ---LTEQ 310 Lambda K H 0.317 0.132 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 340 Number of extensions: 12 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 313 Length of database: 315 Length adjustment: 27 Effective length of query: 286 Effective length of database: 288 Effective search space: 82368 Effective search space used: 82368 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate PP_0794 PP_0794 (1-phosphofructokinase monomer)
to HMM TIGR03828 (pfkB: 1-phosphofructokinase (EC 2.7.1.56))
../bin/blast/fastacmd -i /tmp/list.18896.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18896.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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