Align aspartate ammonia-lyase (EC 4.3.1.1) (characterized)
to candidate PP_5338 PP_5338 aspartate ammonia-lyase
Query= BRENDA::Q9HTD7 (474 letters) >FitnessBrowser__Putida:PP_5338 Length = 478 Score = 831 bits (2147), Expect = 0.0 Identities = 425/474 (89%), Positives = 444/474 (93%) Query: 1 MSPVASSRIEKDLLGTLEVPADAYYGIQTLRAVNNFRLSGVPLSHYPKLVVALAMVKQAA 60 MS AS R+EKDLLGTLEVPADAYYGIQTLRA NNF LSGVPLSHYPKLVVALAMVKQAA Sbjct: 5 MSSAASFRVEKDLLGTLEVPADAYYGIQTLRAANNFHLSGVPLSHYPKLVVALAMVKQAA 64 Query: 61 ADANRQLGHLPEDKHAAISEACARLIRGDFHEQFVVDMIQGGAGTSTNMNANEVIANIAL 120 ADANR+LGHL + KHAAIS ACARLI+GDFH+QFVVDMIQGGAGTSTNMNANEVIAN+AL Sbjct: 65 ADANRELGHLSDAKHAAISAACARLIKGDFHDQFVVDMIQGGAGTSTNMNANEVIANVAL 124 Query: 121 EAMGHTKGEYKYLHPNNDVNMAQSTNDAYPTAIRLGLLLGHDTLLASLDSLIQAFAAKGV 180 EAMGH KGEY+YLHPNNDVNMAQSTNDAYPTAIRLGLLLGHD LLASLDSLIQAFAAKG Sbjct: 125 EAMGHQKGEYQYLHPNNDVNMAQSTNDAYPTAIRLGLLLGHDALLASLDSLIQAFAAKGK 184 Query: 181 EFAGVLKMGRTQLQDAVPMTLGQEFHAFATTLGEDLDRLRRLAPELLTEVNLGGTAIGTG 240 EF VLKMGRTQLQDAVPMTLGQEF AFATT+ EDL RLR LAPELLTE+NLGGTAIGTG Sbjct: 185 EFDHVLKMGRTQLQDAVPMTLGQEFRAFATTMTEDLQRLRSLAPELLTEINLGGTAIGTG 244 Query: 241 INADPGYQKLAVERLAAISGQPLKPAADLIEATSDMGAFVLFSGMLKRTAVKLSKICNDL 300 INADPGYQ LAV+RLA ISG PL PAADLIEATSDMGAFVLFSGMLKRTAVKLSKICNDL Sbjct: 245 INADPGYQALAVQRLATISGHPLVPAADLIEATSDMGAFVLFSGMLKRTAVKLSKICNDL 304 Query: 301 RLLSSGPRTGINEINLPPRQPGSSIMPGKVNPVIPEAVNQVAFEVIGNDLALTLAAEGGQ 360 RLLSSGPRTGINEINLP RQPGSSIMPGKVNPVIPEAVNQVAF ++GNDLALT+AAEGGQ Sbjct: 305 RLLSSGPRTGINEINLPARQPGSSIMPGKVNPVIPEAVNQVAFAIMGNDLALTVAAEGGQ 364 Query: 361 LQLNVMEPLIAYKIFDSIRLLQRAMDMLREHCITGITANVERCHELVEHSIGLVTALNPY 420 LQLNVMEPLIAYKIFDSIRLLQRAMDMLREHCI GITAN +RC ELVEHSIGLVTALNPY Sbjct: 365 LQLNVMEPLIAYKIFDSIRLLQRAMDMLREHCIVGITANEQRCRELVEHSIGLVTALNPY 424 Query: 421 IGYENSTRIAKTALESGRGVLELVREEKLLDEATLADILLPENMIAPRLIPLRA 474 IGYEN+TRIA+ ALESGRGVLELVREEKLLD+A L DIL PENMIAPRL+PL+A Sbjct: 425 IGYENATRIARVALESGRGVLELVREEKLLDDAMLDDILRPENMIAPRLVPLKA 478 Lambda K H 0.318 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 810 Number of extensions: 21 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 474 Length of database: 478 Length adjustment: 33 Effective length of query: 441 Effective length of database: 445 Effective search space: 196245 Effective search space used: 196245 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate PP_5338 PP_5338 (aspartate ammonia-lyase)
to HMM TIGR00839 (aspA: aspartate ammonia-lyase (EC 4.3.1.1))
../bin/blast/fastacmd -i /tmp/list.19180.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19180.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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