Align acetyl-CoA C-acetyltransferase (EC 2.3.1.16) (characterized)
to candidate PP_4636 PP_4636 acetyl-CoA acetyltransferase
Query= metacyc::MONOMER-20831 (393 letters) >FitnessBrowser__Putida:PP_4636 Length = 392 Score = 660 bits (1704), Expect = 0.0 Identities = 332/392 (84%), Positives = 366/392 (93%) Query: 1 MQDVVIVAATRTAVGSFQGSLASIPAPELGAAVIRRLLEQTGLDPAQVDEVILGQVLTAG 60 M DVVIVAATRTA+GSFQG+LA++PA +LGAAVI++LL+QTGLDPAQVDEVILGQVLTAG Sbjct: 1 MNDVVIVAATRTAIGSFQGALATVPAVDLGAAVIKQLLKQTGLDPAQVDEVILGQVLTAG 60 Query: 61 SGQNPARQASILAGLPHAVPSLTLNKVCGSGLKALHLGAQAIRCGDAEVIIAGGMENMSL 120 +GQNPARQA+I AGLP +VP+LTLNKVCGSGLKALHL AQAIRCGDAEV+IAGG ENMSL Sbjct: 61 AGQNPARQAAIKAGLPFSVPALTLNKVCGSGLKALHLAAQAIRCGDAEVVIAGGQENMSL 120 Query: 121 APYVLPAARTGLRMGHAKMIDSMITDGLWDAFNDYHMGITAENLVDKYGISREAQDAFAA 180 APYV+P+ARTG RMGH ++IDSMITDGLWDAFNDYHMGITAENLVDKYG+SRE QDAFAA Sbjct: 121 APYVMPSARTGQRMGHGQLIDSMITDGLWDAFNDYHMGITAENLVDKYGLSREQQDAFAA 180 Query: 181 ASQQKATAAIEAGRFVDEITPILIPQRKGDPVAFAVDEQPRAGTTAESLAKLKPAFKKDG 240 SQ+KA AAIEAGRF EITPI++PQ+KG+P FA DEQPR TTAESLAKL+PAFKKDG Sbjct: 181 ESQRKAVAAIEAGRFDAEITPIVLPQKKGEPKVFARDEQPRPDTTAESLAKLRPAFKKDG 240 Query: 241 SVTAGNASSLNDGAAAVLLMSADKAKALGLPVLARIASYANAGVDPAIMGIGPVSATRRC 300 SVTAGNASSLNDGAAAVLLMSA KA+ALGLPVLA+IA+YA+AGVDPAIMGIGPVSAT+RC Sbjct: 241 SVTAGNASSLNDGAAAVLLMSAAKAEALGLPVLAKIAAYASAGVDPAIMGIGPVSATQRC 300 Query: 301 LDKAGWSLGDLDLIEANEAFAAQSLAVGKELEWDAEKVNVNGGAIAIGHPIGASGCRVLV 360 LDKAGW L +LDLIEANEAFAAQ+LAVG L WDA +VNVNGGAIA+GHPIGASGCRVLV Sbjct: 301 LDKAGWQLAELDLIEANEAFAAQALAVGNALAWDAARVNVNGGAIALGHPIGASGCRVLV 360 Query: 361 TLLHEMIKRDAKKGLATLCIGGGQGVALALER 392 TLLHEMIKRD KKGLATLCIGGGQGVALA+ER Sbjct: 361 TLLHEMIKRDVKKGLATLCIGGGQGVALAIER 392 Lambda K H 0.317 0.133 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 556 Number of extensions: 12 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 393 Length of database: 392 Length adjustment: 31 Effective length of query: 362 Effective length of database: 361 Effective search space: 130682 Effective search space used: 130682 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate PP_4636 PP_4636 (acetyl-CoA acetyltransferase)
to HMM TIGR01930 (acetyl-CoA C-acyltransferase (EC 2.3.1.16))
../bin/blast/fastacmd -i /tmp/list.2653.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.2653.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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