Align triose-phosphate isomerase (EC 5.3.1.1) (characterized)
to candidate PP_4715 PP_4715 triose phosphate isomerase
Query= BRENDA::P0A858 (255 letters) >FitnessBrowser__Putida:PP_4715 Length = 251 Score = 240 bits (613), Expect = 2e-68 Identities = 129/250 (51%), Positives = 164/250 (65%), Gaps = 2/250 (0%) Query: 1 MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIM 60 MR P+V GNWK++G+R V EL L LA +G VA+ PP ++I+ G I Sbjct: 1 MRRPMVAGNWKMHGTRASVAELTKGL-SNLALPSGVEVAVFPPALFINQVIDGLAGKEIT 59 Query: 61 LGAQNVDLNLS-GAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQ 119 +GAQN + GA TGE + L + G + ++IGHSERR E+DE++ +KFA + + Sbjct: 60 VGAQNSAVQPEQGALTGEVAPEQLVEAGCKLVLIGHSERRQIIGETDEVLNRKFAAAQAK 119 Query: 120 GLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSAT 179 GL PVLCIGET E EAGKT EV RQ+ ++++ G AF AVIAYEPVWAIGTG +AT Sbjct: 120 GLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFADAVIAYEPVWAIGTGLTAT 179 Query: 180 PAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKA 239 P QAQ VH IR +A DA +A +V + YGGSV A+NAAELF PDIDG L+GGASL A Sbjct: 180 PQQAQDVHAAIRGQLAAEDAEVAAKVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNA 239 Query: 240 DAFAVIVKAA 249 D F I +AA Sbjct: 240 DEFGAICRAA 249 Lambda K H 0.316 0.130 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 188 Number of extensions: 7 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 255 Length of database: 251 Length adjustment: 24 Effective length of query: 231 Effective length of database: 227 Effective search space: 52437 Effective search space used: 52437 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 46 (22.3 bits)
Align candidate PP_4715 PP_4715 (triose phosphate isomerase)
to HMM TIGR00419 (tpiA: triose-phosphate isomerase (EC 5.3.1.1))
../bin/blast/fastacmd -i /tmp/list.21248.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21248.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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