Align phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) (characterized)
to candidate PP_3578 PP_3578 phosphoglucomutase
Query= BRENDA::I6Y2G3 (547 letters) >FitnessBrowser__Putida:PP_3578 Length = 545 Score = 647 bits (1670), Expect = 0.0 Identities = 341/549 (62%), Positives = 400/549 (72%), Gaps = 8/549 (1%) Query: 1 MVANPRAGQPAQPEDLVDLPHLVTAYYSIEPDPDDLAQQVAFGTSGHRGSALTGTFNELH 60 M +P AG+PA LVD+P L+TAYY+ PD AQ+VAFGTSGHRGS+L +FNE H Sbjct: 1 MTLSPLAGKPAPASVLVDIPRLLTAYYTGRPDATVAAQRVAFGTSGHRGSSLELSFNEYH 60 Query: 61 ILAITQAIVEYRAAQGTTGPLFIGRDTHGLSEPAWVSALEVLAANQVVAVVDSRDRYTPT 120 +LAI+QAI YR +G GPLFIG DTH LS PA SALEVLAAN V ++ D YTPT Sbjct: 61 VLAISQAICLYRQEKGIDGPLFIGADTHALSAPATASALEVLAANGVQVMLSKDDEYTPT 120 Query: 121 PAISHAILTYNRGRTEALADGIVVTPSHNPPSDGGIKYNPPNGGPADTAATTAIAKRANE 180 PA+SHAIL +NRGRT+ LADGIV+TPSHNPP GG KYNPPNGGPAD+ T I +ANE Sbjct: 121 PAVSHAILCHNRGRTQGLADGIVITPSHNPPQSGGFKYNPPNGGPADSDVTKWIEGKANE 180 Query: 181 ILLAR-SMVKRLPLARALR--TAQRHDYLGHYVDDLPNVVDIAAIREAGVRIGADPLGGA 237 +L A + VKR+ A+AL+ T RHDY+ +YV DL NV+D IR AG+R+G DPLGGA Sbjct: 181 LLAANLAGVKRMDHAQALQAPTTHRHDYVSNYVADLENVIDFDVIRGAGLRLGVDPLGGA 240 Query: 238 SVDYWGEIAHRHGLDLTVVNPLVDATWRFMTLDTDGKIRMDCSSPDAMAGLIRTMFGNRE 297 V YW IA + LDL VVN VD T+RFMT+D DG+IRMD SSP AM GLI G RE Sbjct: 241 GVRYWSAIAKHYQLDLEVVNTEVDPTFRFMTVDWDGQIRMDPSSPYAMQGLI----GLRE 296 Query: 298 RYQIATGNDADADRHGIVTPDEGLLNPNHYLAVAIEYLYTHRPSWPAGIAVGKTVVSSSI 357 R+ +A D D DRHGIVTPD GLL PN+YLAVAI+YL+ HRP W + AVGKTVVSS + Sbjct: 297 RFDVAFACDPDHDRHGIVTPD-GLLQPNNYLAVAIDYLFRHRPQWRSDAAVGKTVVSSGL 355 Query: 358 IDRVVAGIGRQLVEVPVGFKWFVDGLIGATLGFGGEESAGASFLRRDGSVWTTDKDGIIM 417 IDRV +GR L EVPVGFK+F GL +LGFGGEESAGASFLRRDGSVW TDKDG+I Sbjct: 356 IDRVTQRLGRDLYEVPVGFKFFAQGLFDGSLGFGGEESAGASFLRRDGSVWATDKDGLIP 415 Query: 418 ALLAAEILAVTGATPSQRYHALAGEYGGPCYARIDAPADREQKARLARLSADQVSATELA 477 ALLAAE+ A TG PSQ Y L G P R++A AD QKA L++L+ +QV +TELA Sbjct: 416 ALLAAEMTARTGRNPSQAYADLTEALGKPFATRVEAKADARQKALLSKLAPEQVKSTELA 475 Query: 478 GEPITAKLTTAPGNGAALGGLKVTTANAWFAARPSGTEDVYKIYAESFRGPQHLVEVQQT 537 GEPI L+ APGNG A+GGLKV TAN WFAARPSGTED+YKIYAESF HL + + Sbjct: 476 GEPIVQILSHAPGNGQAIGGLKVMTANGWFAARPSGTEDIYKIYAESFIDEAHLQRLVEE 535 Query: 538 AREVVDRVI 546 A+ +VD I Sbjct: 536 AQVLVDEAI 544 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 961 Number of extensions: 31 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 547 Length of database: 545 Length adjustment: 35 Effective length of query: 512 Effective length of database: 510 Effective search space: 261120 Effective search space used: 261120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.6 bits)
Align candidate PP_3578 PP_3578 (phosphoglucomutase)
to HMM TIGR01132 (pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific (EC 5.4.2.2))
../bin/blast/fastacmd -i /tmp/list.22645.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.22645.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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