GapMind for catabolism of small carbon sources

 

Alignments for a candidate for gloA in Pseudomonas putida KT2440

Align lactoylglutathione lyase (EC 4.4.1.5) (characterized)
to candidate PP_3766 PP_3766 Lactoylglutathione lyase

Query= BRENDA::Q88GF8
         (175 letters)



>FitnessBrowser__Putida:PP_3766
          Length = 175

 Score =  365 bits (937), Expect = e-106
 Identities = 175/175 (100%), Positives = 175/175 (100%)

Query: 1   MSLHDLQTLPGVTAQPDAATAQFVFNHTMLRVKDIEKSLDFYTRVLGFRLVDKRDFPEAA 60
           MSLHDLQTLPGVTAQPDAATAQFVFNHTMLRVKDIEKSLDFYTRVLGFRLVDKRDFPEAA
Sbjct: 1   MSLHDLQTLPGVTAQPDAATAQFVFNHTMLRVKDIEKSLDFYTRVLGFRLVDKRDFPEAA 60

Query: 61  FSLYFLALVDPAQIPADDTARHQWMKSIPGVLELTHNHGTENDADFAYHNGNTDPRGFGH 120
           FSLYFLALVDPAQIPADDTARHQWMKSIPGVLELTHNHGTENDADFAYHNGNTDPRGFGH
Sbjct: 61  FSLYFLALVDPAQIPADDTARHQWMKSIPGVLELTHNHGTENDADFAYHNGNTDPRGFGH 120

Query: 121 ICISVPDVRAACARFEELEVPFQKRLQDGRMNHLAFVKDPDGYWVEVIQPTELEG 175
           ICISVPDVRAACARFEELEVPFQKRLQDGRMNHLAFVKDPDGYWVEVIQPTELEG
Sbjct: 121 ICISVPDVRAACARFEELEVPFQKRLQDGRMNHLAFVKDPDGYWVEVIQPTELEG 175


Lambda     K      H
   0.323    0.139    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 261
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 175
Length adjustment: 19
Effective length of query: 156
Effective length of database: 156
Effective search space:    24336
Effective search space used:    24336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 44 (21.6 bits)

Align candidate PP_3766 PP_3766 (Lactoylglutathione lyase)
to HMM TIGR00068 (gloA: lactoylglutathione lyase (EC 4.4.1.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.24323.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.24323.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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