Align Methylisocitrate lyase (EC 4.1.3.30) (characterized)
to candidate PP_2334 PP_2334 2-methylisocitrate lyase
Query= reanno::pseudo6_N2E2:Pf6N2E2_6061 (294 letters) >FitnessBrowser__Putida:PP_2334 Length = 296 Score = 525 bits (1353), Expect = e-154 Identities = 267/291 (91%), Positives = 277/291 (95%) Query: 4 STPGQRFRDAVANEHPLQVVGTINANHALLAKRAGFKAIYLSGGGVAAGSLGVPDLGITG 63 STPGQRFRDAVA EHPLQVVG INANHALLAKRAGFKAIYLSGGGVAAGSLG+PDLGITG Sbjct: 5 STPGQRFRDAVAAEHPLQVVGAINANHALLAKRAGFKAIYLSGGGVAAGSLGLPDLGITG 64 Query: 64 LDDVLTDVRRITDVCDLPLLVDVDTGFGSSAFNVARTVKSMIKFGAAAIHIEDQVGAKRC 123 LDDVLTDVRRITDVCDLPLLVDVDTGFG+SAFNVARTV+SM KFGAAAIHIEDQVGAKRC Sbjct: 65 LDDVLTDVRRITDVCDLPLLVDVDTGFGASAFNVARTVRSMSKFGAAAIHIEDQVGAKRC 124 Query: 124 GHRPNKEIVSQQEMVDRIKAAVDARTDDSFVIMARTDALAVEGLESALDRAAACIEAGAD 183 GHRPNKEIVSQQEMVDRIKAAVDAR+DDSFVIMARTDALAVEGL +ALDRA AC+EAGAD Sbjct: 125 GHRPNKEIVSQQEMVDRIKAAVDARSDDSFVIMARTDALAVEGLNAALDRAQACVEAGAD 184 Query: 184 MIFPEAITELEMYKLFASRVKAPILANITEFGATPLYTTEQLAGADVSLVLYPLSAFRAM 243 MIFPEAITEL+MYK FA RVKAPILANITEFGATPLYTTE+LA DVSLVLYPLSAFRAM Sbjct: 185 MIFPEAITELQMYKTFADRVKAPILANITEFGATPLYTTEELASVDVSLVLYPLSAFRAM 244 Query: 244 NKAAENVYTAIRRDGTQQNVIDTMQTRMELYDRIDYHTFEQKLDALFAAKK 294 NKAAENVYTA+RRDGTQ+NVIDTMQTRMELYD I YH FEQ LDALFA KK Sbjct: 245 NKAAENVYTALRRDGTQKNVIDTMQTRMELYDAIGYHAFEQSLDALFAQKK 295 Lambda K H 0.320 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 354 Number of extensions: 6 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 294 Length of database: 296 Length adjustment: 26 Effective length of query: 268 Effective length of database: 270 Effective search space: 72360 Effective search space used: 72360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate PP_2334 PP_2334 (2-methylisocitrate lyase)
to HMM TIGR02317 (prpB: methylisocitrate lyase (EC 4.1.3.30))
../bin/blast/fastacmd -i /tmp/list.32113.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.32113.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.