Align N-acetylgalactosamine-6-phosphate deacetylase; GalNAc-6-P deacetylase; N-acetylglucosamine-6-phosphate deacetylase; GlcNAc-6-P deacetylase; EC 3.5.1.-; EC 3.5.1.25 (characterized)
to candidate 6937024 Sama_1198 N-acetylglucosamine-6-phosphate deacetylase (RefSeq)
Query= SwissProt::A0KYQ5 (394 letters) >FitnessBrowser__SB2B:6937024 Length = 411 Score = 360 bits (924), Expect = e-104 Identities = 199/386 (51%), Positives = 245/386 (63%), Gaps = 5/386 (1%) Query: 4 NTDFMLIA--DGAKVLTQGNLTEHCAIEVSDGIICGLKSTISAEWTADKPHYRLTSGTLV 61 N +F+L+ D ++ GN +V I G TIS D P YRL G L Sbjct: 19 NPEFVLVGADDASEFGVTGNAIAALVPDVWLKISQGHIETISRRPDVDLPQYRLP-GILA 77 Query: 62 AGFIDTQVNGGGGLMFNHVPTLETLRLMMQAHRQFGTTAMLPTVITDDIEVMQAAADAVA 121 +DTQVNGGGG++ NH PT + + Q H Q+GT A+LPTVI+D++ VM+ A D Sbjct: 78 PALVDTQVNGGGGVLINHQPTAAGINTLTQTHGQYGTGALLPTVISDNLAVMEQALDGAI 137 Query: 122 EAIDCQVPGIIGIHFEGPHLSVAKRGCHPPAHLRGITEREWLLYLRQ--DLGVRLITLAP 179 A ++GIHFEGPHLS+AK+GCH PA +R I E E LY LG ++TLAP Sbjct: 138 AARQGGDAAVVGIHFEGPHLSLAKKGCHSPALIRPIGEAEMTLYADAVAALGCCMVTLAP 197 Query: 180 ESVTPEQIKRLVASGAIISLGHSNADGETVLKAIEAGASGFTHLYNGMSALTSREPGMVG 239 E+V P I RLVA G +SLGHSNAD TV ++ AGASGFTHL+NGMSAL REPGMVG Sbjct: 198 ETVEPADIARLVALGVRVSLGHSNADVATVEASLAAGASGFTHLFNGMSALQGREPGMVG 257 Query: 240 AAFASENTYCGIILDGQHVHPISALAAWRAKGTEHLMLVTDAMSPLGSDQTEFQFFDGKV 299 AA A YCGIILDG+HVH SA AWR KGT LMLVTDAMSP G+ + F+FF GKV Sbjct: 258 AALACPEAYCGIILDGEHVHATSATLAWRLKGTRRLMLVTDAMSPTGTREESFEFFGGKV 317 Query: 300 VREGMTLRDQHGSLAGSVLDMASAVRYAATELNLGLSNAVQMATRTPAEFIQRPQLGDIA 359 R+GM LRD+ GSLAGSVL M +AVR A L + + A+ MAT TPA F+ +G +A Sbjct: 318 HRDGMVLRDEQGSLAGSVLTMTAAVRQACAMLGVSAAEALWMATATPAAFLGLKDIGRLA 377 Query: 360 EGKQADWVWLDDDQRVLAVWIAGELL 385 G +AD + LDD L W AG+L+ Sbjct: 378 PGNRADLLLLDDALYQLGRWQAGQLV 403 Lambda K H 0.320 0.134 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 497 Number of extensions: 12 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 394 Length of database: 411 Length adjustment: 31 Effective length of query: 363 Effective length of database: 380 Effective search space: 137940 Effective search space used: 137940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate 6937024 Sama_1198 (N-acetylglucosamine-6-phosphate deacetylase (RefSeq))
to HMM TIGR00221 (nagA: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25))
../bin/blast/fastacmd -i /tmp/list.17122.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.17122.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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