Align Malate synthase (EC 2.3.3.9) (characterized)
to candidate 6938261 Sama_2381 malate synthase (RefSeq)
Query= reanno::MR1:200654 (549 letters) >FitnessBrowser__SB2B:6938261 Length = 543 Score = 911 bits (2354), Expect = 0.0 Identities = 449/548 (81%), Positives = 481/548 (87%), Gaps = 9/548 (1%) Query: 1 MTEHTLSEQQVNLTLNKATANGTLALVGNTIPGQEVIFTEGAMALLESLCREFGAEVPTL 60 MTE + + Q T G L L G+ I GQE +FTEGAM+LLESLC F +V L Sbjct: 1 MTEQMMEQPQ--------TLTG-LKLAGHHIQGQEEVFTEGAMSLLESLCARFAGDVDAL 51 Query: 61 LAKRKDRQARIDKGALPDFLPETRAIRDGAWKIRGIPNDLLDRRVEITGPVERKMVINAL 120 LAKRK+RQ RIDKG LPDFLPETRAIRDG W IRGIP DL DRRVEITGPV+RKM+INAL Sbjct: 52 LAKRKERQVRIDKGELPDFLPETRAIRDGKWTIRGIPTDLQDRRVEITGPVDRKMIINAL 111 Query: 121 NANAKVFMADFEDSLAPSWQKVVEGQINLRDAVRGEIEYTAPETGKHYKLGPNPAVLICR 180 NA+ KVFMADFEDSLAPSW+KV++GQINLRDAVRG IEY AP+TGK Y+L NPAVLI R Sbjct: 112 NADVKVFMADFEDSLAPSWEKVIQGQINLRDAVRGTIEYKAPDTGKEYRLNDNPAVLIAR 171 Query: 181 VRGLHLKEKHVEFNQQSIPGGLFDFAMYFYHNYRQLLAKGSGPYFYIPKLESHIEARWWA 240 VRGLHLKEKHVEFN QSIPG LFDF YFYHNYRQLL+KGSGPYFYIPKLESH+EARWWA Sbjct: 172 VRGLHLKEKHVEFNGQSIPGALFDFCFYFYHNYRQLLSKGSGPYFYIPKLESHLEARWWA 231 Query: 241 KVFAFVEERFCLQAGTIKCTCLIETLPAVFEMDEILYELRSNIVALNCGRWDYIFSYIKT 300 KVFAF EERFCL+ GTIKCTCLIETLPAVFEMDEILYELRSNIVALNCGRWDYIFSYIKT Sbjct: 232 KVFAFTEERFCLEPGTIKCTCLIETLPAVFEMDEILYELRSNIVALNCGRWDYIFSYIKT 291 Query: 301 LKRHGDRVLPDRQAVTMDTPFLSAYSRLLIKTCHKRGALAMGGMAAFIPAKDPAQNEAVL 360 LK H DRVLPDRQ VTMD PFLSAYSRLLIKTCHKRGALAMGGMAAFIPAKD N VL Sbjct: 292 LKHHSDRVLPDRQQVTMDKPFLSAYSRLLIKTCHKRGALAMGGMAAFIPAKDAEANRLVL 351 Query: 361 QRVRKDKELEARNGHDGTWVAHPGLADTAMGIFNEYIGQDHQNQLHITRDVDAPILAAEL 420 +RV KDKELEARNGHDGTWVAHPGLA TAM +FN++IG DH NQLHITRDVDAPILA+EL Sbjct: 352 ERVCKDKELEARNGHDGTWVAHPGLAQTAMAVFNQFIGDDHCNQLHITRDVDAPILASEL 411 Query: 421 LKTCDGERTEQGMRLNIRIALQYLEAWISGNGCVPIYGLMEDAATAEISRASIWQWIQHG 480 L C+GERTE GMRLNIRIALQY+EAWISGNGCVPIYGLMEDAATAEISRASIWQWI H Sbjct: 412 LAPCEGERTEHGMRLNIRIALQYIEAWISGNGCVPIYGLMEDAATAEISRASIWQWIHHQ 471 Query: 481 KSLSNGKLVTKQLFKDMLVEELANVKKEVGSDRFTHGKFTQAAVLLEDITTSDELVDFLT 540 K LSNGKLVTK L K+MLVEELANVK+EVGS+RFTHG+FTQAAVLLE+ITT+DELVDFLT Sbjct: 472 KHLSNGKLVTKALLKEMLVEELANVKEEVGSERFTHGRFTQAAVLLEEITTADELVDFLT 531 Query: 541 LPGYEMLT 548 LPGYE+LT Sbjct: 532 LPGYELLT 539 Lambda K H 0.321 0.137 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1004 Number of extensions: 22 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 549 Length of database: 543 Length adjustment: 35 Effective length of query: 514 Effective length of database: 508 Effective search space: 261112 Effective search space used: 261112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.6 bits)
Align candidate 6938261 Sama_2381 (malate synthase (RefSeq))
to HMM TIGR01344 (aceB: malate synthase A (EC 2.3.3.9))
../bin/blast/fastacmd -i /tmp/list.14283.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14283.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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