Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 (characterized)
to candidate 6938359 Sama_2478 pyrroline-5-carboxylate reductase (RefSeq)
Query= SwissProt::P22008 (273 letters) >FitnessBrowser__SB2B:6938359 Length = 271 Score = 200 bits (508), Expect = 3e-56 Identities = 112/269 (41%), Positives = 166/269 (61%), Gaps = 2/269 (0%) Query: 1 MSTPRIAFIGAGNMAASLIGGLRAQGVPAAQIRASDPGAEQRAKIAGEFAIDVVESNAEA 60 M +I FIGAGNM+ ++IGGL G A+ I A++P + +A ++ I+ + N + Sbjct: 1 MQNKKICFIGAGNMSRAIIGGLIKSGYSASLITATNPSLPKLDALAADYGINTSQDNVPS 60 Query: 61 VADADVVVLSVKPQAMKAVCQALAPALKPEQLIVSIAAGIPCASLEAWLGQPRPVVRCMP 120 + ADV+VLSVKPQ M+AVC++LA + ++L+++IAAGIP + G+ ++R MP Sbjct: 61 ASAADVIVLSVKPQLMQAVCESLAGVVD-DKLLITIAAGIPENRYHDYFGKQVKLIRTMP 119 Query: 121 NTPALLRQGASGLYANAQVSAAQCEQAGQLLSAVGIALWLDDEAQIDAVTAVSGSGPAYF 180 NTP L G +GLYA A + A L+ A G +W+++E+ ID V A++GS PAYF Sbjct: 120 NTPMQLGLGMTGLYAPAGMPDEDKAFAESLMRACGDIVWVNEESGIDKVIALAGSSPAYF 179 Query: 181 FLLMQAMTDAGEKLGLSRETASRLTLQTALGAAQMALSSE-VEPAELRRRVTSPNGTTEA 239 FL ++AM +AG ++GL A L Q A+GAA M + + PAELR VTS GTT Sbjct: 180 FLFIEAMIEAGVEMGLPEADARTLAQQAAVGAAAMVKQNPGLTPAELRANVTSKGGTTAE 239 Query: 240 AIKSFQANGFEALVEQALNAASQRSAELA 268 AI +F+A G LV+ A+ +R+ E+A Sbjct: 240 AIATFEAGGLRTLVKDAMGNCIKRAEEMA 268 Lambda K H 0.315 0.127 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 188 Number of extensions: 7 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 273 Length of database: 271 Length adjustment: 25 Effective length of query: 248 Effective length of database: 246 Effective search space: 61008 Effective search space used: 61008 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 47 (22.7 bits)
Align candidate 6938359 Sama_2478 (pyrroline-5-carboxylate reductase (RefSeq))
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))
../bin/blast/fastacmd -i /tmp/list.29684.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.29684.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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