Align acetate kinase (EC 2.7.2.1) (characterized)
to candidate 6937325 Sama_1495 acetate kinase (RefSeq)
Query= BRENDA::E3W769 (401 letters) >FitnessBrowser__SB2B:6937325 Length = 399 Score = 672 bits (1733), Expect = 0.0 Identities = 332/398 (83%), Positives = 362/398 (90%), Gaps = 1/398 (0%) Query: 1 MSDKLVLVLNCGSSSLKFAIIDAQSGDDKISGLAECFGLEDSRIKWKFNGGKNEAKLGAF 60 MS+ LVLVLNCGSSSLKFAI+DA +GD+KISGLAECFGLE++RIKWK G K+EA LGAF Sbjct: 1 MSNTLVLVLNCGSSSLKFAILDATNGDEKISGLAECFGLENARIKWKLRGEKHEASLGAF 60 Query: 61 TAHREAVEFFIVNNILAEHPELAAQIKAIGHRIVHGGEKFTRSVIITPEVIQGIEDCASL 120 +AHREAVE+ IVN IL PEL Q+ AIGHRIVHGGEKFT SVII V++GIEDCASL Sbjct: 61 SAHREAVEY-IVNKILVNEPELKGQLIAIGHRIVHGGEKFTHSVIIDDAVLKGIEDCASL 119 Query: 121 APLHNPAHLIGIRAAIASFPQLPQVTVFDTAFHQTMPEKAYIYALPYKLYREHSIRRYGM 180 APLHNPAHLIGIRAA ASFP LPQV VFDTAFHQ+MP++AYIYALPYKLYREH IRRYGM Sbjct: 120 APLHNPAHLIGIRAAQASFPSLPQVAVFDTAFHQSMPDRAYIYALPYKLYREHGIRRYGM 179 Query: 181 HGTSHFYVCREAAKVLGKDVKDINVICAHLGNGASVAAIKGGKSVDTSMGLTPLEGLVMG 240 HGTSH +V REAAK LGKDV D NVICAHLGNGASV A+KGGKSVDTSMGLTPLEGLVMG Sbjct: 180 HGTSHLFVSREAAKALGKDVNDTNVICAHLGNGASVTAVKGGKSVDTSMGLTPLEGLVMG 239 Query: 241 TRCGDLDPSIIFHLVKQLGYTLDEVNNLLNKQSGLLGISELTNDCRGIEEGYHDGHKGAT 300 TRCGDLDPSII+HLV QLGYTLDEVNNL+NKQSGLLGISELTNDCRGIEEGY +GHKGAT Sbjct: 240 TRCGDLDPSIIYHLVHQLGYTLDEVNNLMNKQSGLLGISELTNDCRGIEEGYAEGHKGAT 299 Query: 301 LALDIFCYRLAKYIASYTVPLGRLDAIIFTGGIGENSNLIREKVLNLLEIFNFKVDDILN 360 LAL+IFCYRLAKYIASYTVPLGRLDAI+FTGGIGENS+LIREKVLNLLEIF F+VD N Sbjct: 300 LALEIFCYRLAKYIASYTVPLGRLDAIVFTGGIGENSDLIREKVLNLLEIFKFEVDSERN 359 Query: 361 KAARFGQQGVITQAGTPIAMVIPTNEEWVIAEDAIKLI 398 KAARFG QGVIT+ G+PIAMVIPTNEEWVIAED+++L+ Sbjct: 360 KAARFGNQGVITKEGSPIAMVIPTNEEWVIAEDSLRLV 397 Lambda K H 0.321 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 610 Number of extensions: 24 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 401 Length of database: 399 Length adjustment: 31 Effective length of query: 370 Effective length of database: 368 Effective search space: 136160 Effective search space used: 136160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate 6937325 Sama_1495 (acetate kinase (RefSeq))
to HMM TIGR00016 (ackA: acetate kinase (EC 2.7.2.1))
../bin/blast/fastacmd -i /tmp/list.31771.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.31771.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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