Align 3-ketoacyl-CoA thiolase FadI; ACSs; Acetyl-CoA acyltransferase; Acyl-CoA ligase; Beta-ketothiolase; Fatty acid oxidation complex subunit beta; EC 2.3.1.16 (characterized)
to candidate 6938035 Sama_2168 3-ketoacyl-CoA thiolase (RefSeq)
Query= SwissProt::P76503 (436 letters) >FitnessBrowser__SB2B:6938035 Length = 436 Score = 625 bits (1613), Expect = 0.0 Identities = 305/426 (71%), Positives = 366/426 (85%) Query: 11 QGDRIAIVSGLRTPFARQATAFHGIPAVDLGKMVVGELLARSEIPAEVIEQLVFGQVVQM 70 +G+RIAIVSGLRTPFA+QATAFHG+ A+D+GKMVV ELL+RSE+ +++EQLV+GQVVQM Sbjct: 11 RGERIAIVSGLRTPFAKQATAFHGVSALDMGKMVVNELLSRSELDPKLVEQLVYGQVVQM 70 Query: 71 PEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSS 130 P APNIAREIVLGTGMNV TDAYSV+RACATSFQ+ N+AES+M G I GIAGGADSSS Sbjct: 71 PAAPNIAREIVLGTGMNVATDAYSVTRACATSFQSTVNIAESIMTGNIEIGIAGGADSSS 130 Query: 131 VLPIGVSKKLARVLVDVNKARTMSQRLKLFSRLRLRDLMPVPPAVAEYSTGLRMGDTAEQ 190 VLPIGVSKKLA LVD+ KART Q+L +F RL ++DL+PVPPAVAEYSTGL MG TAEQ Sbjct: 131 VLPIGVSKKLAHALVDLTKARTFGQKLAIFRRLGIKDLLPVPPAVAEYSTGLSMGQTAEQ 190 Query: 191 MAKTYGITREQQDALAHRSHQRAAQAWSDGKLKEEVMTAFIPPYKQPLVEDNNIRGNSSL 250 MAKT+GI+R QDA+AHRSH AAQ W+ G +K EVM A +PPY Q + +DNNIR +S L Sbjct: 191 MAKTHGISRADQDAMAHRSHTLAAQTWASGVMKNEVMVAHVPPYNQFIEKDNNIRESSDL 250 Query: 251 ADYAKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLVPLGYLRSYAFTAID 310 A YAKLRP FDRKHG+VTAANSTPLTDGA+A++LM+E RAK LG P+GY++SYAF AID Sbjct: 251 ASYAKLRPVFDRKHGSVTAANSTPLTDGASALLLMSEGRAKALGYTPIGYIKSYAFAAID 310 Query: 311 VWQDMLLGPAWSTPLALERAGLTMSDLTLIDMHEAFAAQTLANIQLLGSERFAREALGRA 370 VW+DML+GP+++TP+AL+RAG+ + DLTLI+MHEAFAAQ LAN+++ S++FA E LG+ Sbjct: 311 VWEDMLMGPSYATPMALKRAGMQLEDLTLIEMHEAFAAQALANMKMFASKKFAEEKLGQN 370 Query: 371 HATGEVDDSKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAA 430 A GE+D SKFNVLGGS+AYGHPFAATGAR+ITQ +EL+RRGGG GL TACAAGGLGAA Sbjct: 371 RAIGEIDMSKFNVLGGSLAYGHPFAATGARLITQMCNELKRRGGGVGLTTACAAGGLGAA 430 Query: 431 MVLEAE 436 M+LE E Sbjct: 431 MILEVE 436 Lambda K H 0.319 0.133 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 573 Number of extensions: 9 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 436 Length of database: 436 Length adjustment: 32 Effective length of query: 404 Effective length of database: 404 Effective search space: 163216 Effective search space used: 163216 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate 6938035 Sama_2168 (3-ketoacyl-CoA thiolase (RefSeq))
to HMM TIGR02446 (fadI: acetyl-CoA C-acyltransferase FadI (EC 2.3.1.16))
../bin/blast/fastacmd -i /tmp/list.25688.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.25688.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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