Align dihydrolipoyl dehydrogenase (EC 1.8.1.4) (characterized)
to candidate 6936188 Sama_0377 dihydrolipoamide dehydrogenase (RefSeq)
Query= BRENDA::P0A9P0 (474 letters) >FitnessBrowser__SB2B:6936188 Length = 476 Score = 844 bits (2181), Expect = 0.0 Identities = 419/475 (88%), Positives = 450/475 (94%), Gaps = 1/475 (0%) Query: 1 MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVA 60 MS +IKTQVVVLGAGPAGYSAAFR ADLGLETVI+ER++TLGGVCLNVGCIPSKALLH+A Sbjct: 1 MSNQIKTQVVVLGAGPAGYSAAFRAADLGLETVIIERFSTLGGVCLNVGCIPSKALLHIA 60 Query: 61 KVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFT 120 KVIEEAK AEHG+VFGEP DIDK+R +KEKVI QLTGGL GMAK RKV+VVNGLGKFT Sbjct: 61 KVIEEAKTAAEHGVVFGEPSIDIDKLRGYKEKVIGQLTGGLGGMAKMRKVQVVNGLGKFT 120 Query: 121 GANTLEVEGENGK-TVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLL 179 G N++EV G +G TVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVP++LL Sbjct: 121 GPNSIEVTGADGAATVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPKKLL 180 Query: 180 VMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRISKKFNLMLETKVT 239 VMGGGIIGLEMGTVYHALGS IDVVEMFDQVIPAADKD+VKV+T++ISKKFNLMLETKVT Sbjct: 181 VMGGGIIGLEMGTVYHALGSDIDVVEMFDQVIPAADKDVVKVYTRKISKKFNLMLETKVT 240 Query: 240 AVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDK 299 AVEAKEDGIYV+MEGKKAP EP RYDAVLVAIGR PNGK +DA KAG+ VD+RGFI+VDK Sbjct: 241 AVEAKEDGIYVSMEGKKAPTEPVRYDAVLVAIGRTPNGKLIDADKAGINVDERGFIKVDK 300 Query: 300 QLRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAW 359 QLRTNVPHIFA+GDIVGQPMLAHKGVHEGHVAAEVI+G KH+FDPKVIPSIAYT+PEVAW Sbjct: 301 QLRTNVPHIFAVGDIVGQPMLAHKGVHEGHVAAEVISGLKHFFDPKVIPSIAYTDPEVAW 360 Query: 360 VGLTEKEAKEKGISYETATFPWAASGRAIASDCADGMTKLIFDKESHRVIGGAIVGTNGG 419 VGLTEKEAKEKGI+YETATFPWAASGRAIASD +DGMTKLIFDKE+HRVIGGAIVG NGG Sbjct: 361 VGLTEKEAKEKGIAYETATFPWAASGRAIASDASDGMTKLIFDKETHRVIGGAIVGVNGG 420 Query: 420 ELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEVFEGSITDLPNPKAKKK 474 ELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEV+EGSITDLPNPKAKKK Sbjct: 421 ELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEVYEGSITDLPNPKAKKK 475 Lambda K H 0.317 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 858 Number of extensions: 23 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 474 Length of database: 476 Length adjustment: 33 Effective length of query: 441 Effective length of database: 443 Effective search space: 195363 Effective search space used: 195363 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 51 (24.3 bits)
Align candidate 6936188 Sama_0377 (dihydrolipoamide dehydrogenase (RefSeq))
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.14871.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14871.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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