Align fructose-bisphosphate aldolase (EC 4.1.2.13) (characterized)
to candidate 6938653 Sama_2756 fructose-1,6-bisphosphate aldolase (RefSeq)
Query= BRENDA::Q602L6 (354 letters) >FitnessBrowser__SB2B:6938653 Length = 355 Score = 504 bits (1297), Expect = e-147 Identities = 249/351 (70%), Positives = 284/351 (80%) Query: 1 MALISLRQLLDHAAEHGYGLPAFNVNNMEQIKAIMEAASAVDAPVILQGSAGARTYAGEP 60 MALISLRQLLDHAAEHGYG+PAFNVNN+EQ++AIM+AA A D+PVI+Q SAGAR YA Sbjct: 1 MALISLRQLLDHAAEHGYGVPAFNVNNLEQMRAIMQAAEATDSPVIVQASAGARKYARPQ 60 Query: 61 FLRHLVRAAIEMYPHIPVCMHQDHGASPAVCIRSIQSGFSSVMMDGSLLEDMKTPASYAY 120 FL++L+ AA+E YP IPVC+HQDHG P VC RSIQ G SSVMMDGSL+ D KTPASY Y Sbjct: 61 FLKYLMNAALEQYPDIPVCIHQDHGTHPDVCQRSIQLGMSSVMMDGSLMSDGKTPASYDY 120 Query: 121 NVETTRKVVEMAHACGVSVEGELGCLGSLETGRAGKEDGHGAEGELDHSLLLTDPDEAAD 180 NV+ TRK V AHACGVSVEGE+GCLGSLETG AG+EDG GA G L H LLT +EAA Sbjct: 121 NVDVTRKTVAFAHACGVSVEGEIGCLGSLETGTAGEEDGIGAVGVLSHDQLLTTAEEAAR 180 Query: 181 FVRQTQVDALAIAIGTSHGAYKFTRKPTGQVLRIDRVKAIHQRIPTIHLVMHGSSSVPEE 240 FV T VDALAIAIGTSHGAYKF+RKPTG VLRIDR+K IH RIP HLVMHGSSSVP+ Sbjct: 181 FVADTHVDALAIAIGTSHGAYKFSRKPTGDVLRIDRIKEIHARIPNTHLVMHGSSSVPQY 240 Query: 241 WAQMINDYGGDIGQTYGVPVEEIVEGIRHGVRKVNIDTDLRIASYGAMRRFMVEDRKNFD 300 W ++IN YGG+I +TYGVP+EEIVEGI+HGVRKVNIDTDLR+AS GA+R+F+ E+ FD Sbjct: 241 WLEIINQYGGEIPETYGVPLEEIVEGIKHGVRKVNIDTDLRLASTGAVRKFLAENPSEFD 300 Query: 301 PRKLYKAAQTAMTAICRARYEAFGAAGQAAKIKPLRLEDMSLAYAQGKLDP 351 PRK KA+ AM IC RYEAFG AG A+KIKPL L+ M Y G+LDP Sbjct: 301 PRKFLKASMEAMADICTERYEAFGCAGMASKIKPLSLQAMYKRYQTGELDP 351 Lambda K H 0.320 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 486 Number of extensions: 18 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 354 Length of database: 355 Length adjustment: 29 Effective length of query: 325 Effective length of database: 326 Effective search space: 105950 Effective search space used: 105950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate 6938653 Sama_2756 (fructose-1,6-bisphosphate aldolase (RefSeq))
to HMM TIGR01521 (fba: fructose-bisphosphate aldolase, class II, Calvin cycle subtype (EC 4.1.2.13))
../bin/blast/fastacmd -i /tmp/list.25873.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.25873.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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