Align 2-methylisocitrate lyase; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 (characterized)
to candidate 6939200 Sama_3294 2-methylisocitrate lyase (RefSeq)
Query= SwissProt::Q8EJW1 (292 letters) >FitnessBrowser__SB2B:6939200 Length = 294 Score = 508 bits (1309), Expect = e-149 Identities = 259/292 (88%), Positives = 274/292 (93%) Query: 1 MTQSAGLRFRQALANSKPLQIVGTTNAYFALMAEQTGFQALYLSGAGVANASYGLPDLGM 60 MT SAG RFR ALA SKPLQIVGTTNAYFALMAE+TGFQALYLSGAGVANASYGLPDLGM Sbjct: 1 MTHSAGKRFRDALARSKPLQIVGTTNAYFALMAEKTGFQALYLSGAGVANASYGLPDLGM 60 Query: 61 TSMNDVLIDAGRITSATQLPLLVDIDTGWGGAFNIARTIKEFEKIGVAAVHMEDQVSQKR 120 TSMNDVLIDAGRITSATQLPLLVDIDTGWGGAFNIARTIKEFEK+GVAAVHMEDQVSQKR Sbjct: 61 TSMNDVLIDAGRITSATQLPLLVDIDTGWGGAFNIARTIKEFEKVGVAAVHMEDQVSQKR 120 Query: 121 CGHRPNKAVVSTEEMVDRIKAAVDARTDPNFVIMARTDAVAVEGLEAGIERAKAYIAAGA 180 CGHRPNKAVVSTEEMVDRIKAAVDARTD NFVIMARTDAVAVEGL+AGIERA+AYI AGA Sbjct: 121 CGHRPNKAVVSTEEMVDRIKAAVDARTDENFVIMARTDAVAVEGLDAGIERAQAYIEAGA 180 Query: 181 DMIFAEALTELDQYRHFKAQVKAPILANMTEFGQTQLFNKEELAQAGADMVLYPLGTFRA 240 DMIFAEALTEL QYR FK VKAPILANMTEFGQT+LF+K L +AGADMVLYPLGTFRA Sbjct: 181 DMIFAEALTELPQYRKFKDAVKAPILANMTEFGQTELFDKSALYEAGADMVLYPLGTFRA 240 Query: 241 ANQAALKVMQALMNDGHQRNVLDTMQTRADLYKYLGYHAFEDKLDQLFSQDK 292 ANQAALKVMQALMNDGHQRNVL TMQ+R +LY++L YH+FED LD+LF++ K Sbjct: 241 ANQAALKVMQALMNDGHQRNVLSTMQSRKELYEFLNYHSFEDTLDRLFAEGK 292 Lambda K H 0.319 0.132 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 408 Number of extensions: 10 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 292 Length of database: 294 Length adjustment: 26 Effective length of query: 266 Effective length of database: 268 Effective search space: 71288 Effective search space used: 71288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate 6939200 Sama_3294 (2-methylisocitrate lyase (RefSeq))
to HMM TIGR02317 (prpB: methylisocitrate lyase (EC 4.1.3.30))
../bin/blast/fastacmd -i /tmp/list.26863.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.26863.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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