Align threonine ammonia-lyase (EC 4.3.1.19) (characterized)
to candidate 6939184 Sama_3278 threonine dehydratase (RefSeq)
Query= BRENDA::P04968 (514 letters) >FitnessBrowser__SB2B:6939184 Length = 531 Score = 604 bits (1557), Expect = e-177 Identities = 308/506 (60%), Positives = 382/506 (75%), Gaps = 10/506 (1%) Query: 16 YLRAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTE 75 YL+ +L + VY+ A+VTPL M KLS+RL I +KRED QPVHSFKLRGAY ++ LT+ Sbjct: 24 YLQKILLSSVYDVAKVTPLSHMGKLSARLGQEIYLKREDMQPVHSFKLRGAYNRISQLTQ 83 Query: 76 EQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANF 135 + GV+ ASAGNHAQGVA S++ G+ A+IVMPT T DIK+DAVR GG VLLHG +F Sbjct: 84 PECERGVVCASAGNHAQGVALSASSRGIDAVIVMPTTTPDIKIDAVRRRGGNVLLHGESF 143 Query: 136 DEAKAKAIELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAG 195 D+A A A L+Q +G ++ PFD VIAGQGT+A E+LQQ L+ VFVPVGGGGL AG Sbjct: 144 DQANAHAQHLAQTEGRVYIAPFDDEAVIAGQGTVAQEMLQQQRDLELVFVPVGGGGLVAG 203 Query: 196 VAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLC 255 +A K + P +K+I VE ED+ACLKAA+ AG PV L +VGLFA+GVAVKRIG E FR+ Sbjct: 204 IAAYYKAVRPSVKIIGVEPEDAACLKAAMAAGEPVTLSQVGLFADGVAVKRIGAEPFRIA 263 Query: 256 QEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIR-------GE 308 + Y+D+++TV SD ICAA+KD+FED RA+AEP+GAL+LAG+KKY+A Sbjct: 264 KHYVDEVVTVSSDEICAAVKDIFEDTRAIAEPAGALSLAGLKKYLAQTTPALAEAGKPAR 323 Query: 309 RLAHILSGANVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFN 368 ++A ILSGANVNFH LRYVSERCELGEQ+EA+LAV +PE GSFLKFC+LLG R++TEFN Sbjct: 324 KVAAILSGANVNFHSLRYVSERCELGEQKEAVLAVKVPEVPGSFLKFCELLGKRAMTEFN 383 Query: 369 YRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPS 428 YRF+ +A +F G+RLS G E KEI+ L GG+ V DLS DE AKLHVRYMVGG P+ Sbjct: 384 YRFSGRDSAVVFAGIRLSGGQSELKEIIASLTSGGFEVQDLSSDETAKLHVRYMVGGHPT 443 Query: 429 HPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFEL--GDHEP 486 PL ERL+SFEFPE PGALL+FL TLG+ WNISLFHYR+HG +GRVLA FE+ GD+E Sbjct: 444 EPLSERLFSFEFPEYPGALLKFLTTLGSRWNISLFHYRNHGAAFGRVLAGFEVPEGDNEA 503 Query: 487 DFETRLNELGYDCHDETNNPAFRFFL 512 F L ELG+ +ET++PA+R FL Sbjct: 504 -FGRFLTELGFVWQEETHSPAYRLFL 528 Lambda K H 0.321 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 746 Number of extensions: 30 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 514 Length of database: 531 Length adjustment: 35 Effective length of query: 479 Effective length of database: 496 Effective search space: 237584 Effective search space used: 237584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.6 bits)
Align candidate 6939184 Sama_3278 (threonine dehydratase (RefSeq))
to HMM TIGR01124 (ilvA: threonine ammonia-lyase, biosynthetic (EC 4.3.1.19))
../bin/blast/fastacmd -i /tmp/list.10286.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10286.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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