Align 3-Carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) (characterized)
to candidate SM_b20575 SM_b20575 3-carboxy-cis,cis-muconate cycloisomerase
Query= BRENDA::Q2HNZ1 (353 letters) >FitnessBrowser__Smeli:SM_b20575 Length = 351 Score = 392 bits (1006), Expect = e-113 Identities = 206/349 (59%), Positives = 247/349 (70%) Query: 1 MSLSPFEHPFLSGLFGDSEIIELFSAKADIDAMIRFETALAQAEAEASIFADDEAEAIVS 60 M+ S F+HP+LSGL GD + FS AD+ AM+ FE ALA+AEA + + A I Sbjct: 1 MTYSAFDHPYLSGLLGDEAVAAEFSVVADVRAMLAFEAALARAEARHGVIPEAAANRIAE 60 Query: 61 GLSEFAADMSALRHGVAKDGVVVPELIRQMRAAVAGQGADKVHFGATSQDVIDTSLMLRL 120 F+ D+ A+R A DGVVVPEL+RQ+R AV + A+ VHFGATSQDV+DTSLMLRL Sbjct: 61 ACRGFSPDVGAMRRATAIDGVVVPELVRQLRRAVGEEAAEHVHFGATSQDVVDTSLMLRL 120 Query: 121 KMAAEIIATRLGHLIDTLGDLASRDGHKPLTGYTRMQAAIGITVADRAAGWIAPLERHLL 180 K AE+ + R+G ++ L G + LT +TRMQ AI ITVADR WI PL H Sbjct: 121 KAIAELFSGRVGDVVTALEACGRHWGERALTAHTRMQPAIAITVADRLRSWIEPLLDHQD 180 Query: 181 RLETFAQNGFALQFGGAAGTLEKLGDNAGAVRADLAKRLGLADRPQWHNQRDGIPEFANL 240 RL+T + FA+QFGGAAGTLEKL A VRA LA+ L L D PQWH+QR I +FA+L Sbjct: 181 RLDTTGTDIFAVQFGGAAGTLEKLKGKADIVRATLAEELALVDCPQWHSQRLPIADFAHL 240 Query: 241 LSLVTGTLGKFGQDIALMAEIGSEIRLSGGGGSSAMPHKQNPVNAETLVTLARFNAVQIS 300 LSLVTG+LGKFGQD+ALMA+ G EI L+GGGGSSAMPHKQNPV AE LVTLARFNA Q+S Sbjct: 241 LSLVTGSLGKFGQDVALMAQAGDEIVLAGGGGSSAMPHKQNPVAAEVLVTLARFNATQVS 300 Query: 301 ALHQSLVQEQERSGAGWMLEWLTLPQMVTATGTSLLVAERLAAQIDRLG 349 A+HQSLV EQERSG+ W LEWL LPQMV AT +L +A LA + RLG Sbjct: 301 AIHQSLVHEQERSGSAWTLEWLILPQMVGATAAALRLAAELAGNVRRLG 349 Lambda K H 0.318 0.133 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 401 Number of extensions: 17 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 353 Length of database: 351 Length adjustment: 29 Effective length of query: 324 Effective length of database: 322 Effective search space: 104328 Effective search space used: 104328 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate SM_b20575 SM_b20575 (3-carboxy-cis,cis-muconate cycloisomerase)
to HMM TIGR02426 (pcaB: 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2))
../bin/blast/fastacmd -i /tmp/list.23367.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.23367.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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