GapMind for catabolism of small carbon sources

 

Alignments for a candidate for PRO3 in Sinorhizobium meliloti 1021

Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 (characterized)
to candidate SMc02677 SMc02677 pyrroline-5-carboxylate reductase

Query= SwissProt::P22008
         (273 letters)



>FitnessBrowser__Smeli:SMc02677
          Length = 272

 Score =  184 bits (467), Expect = 2e-51
 Identities = 110/265 (41%), Positives = 153/265 (57%), Gaps = 4/265 (1%)

Query: 6   IAFIGAGNMAASLIGGLRAQGVPAAQIRASDPG-AEQRAKIAGEFAIDVVESNAEAVADA 64
           I  +GAGNM  +++ G    GV  + +   DPG +   AK+  +  +    S A A   A
Sbjct: 9   IVLVGAGNMGGAMLAGWLKSGVRGSDVLVIDPGPSPAMAKLLADSGVQHATS-APAGGKA 67

Query: 65  DVVVLSVKPQAMKAVCQALAPALKPEQLIVSIAAGIPCASLEAWLGQPRPVVRCMPNTPA 124
             + L+VKPQ M+ V   L   + P+ +IVS+AAG     +E  LG+    VR MPNTPA
Sbjct: 68  GAIFLAVKPQVMETVLPPLKGLVGPQTVIVSVAAGKTLGFIERHLGEAA-TVRAMPNTPA 126

Query: 125 LLRQGASGLYANAQVSAAQCEQAGQLLSAVGIALWLDDEAQIDAVTAVSGSGPAYFFLLM 184
           ++ +G +G +ANA+VS AQ      LL   G   W+  EA IDAVTAVSGSGPAY F L+
Sbjct: 127 MIGRGVTGAFANARVSEAQRALVHDLLKVSGPVEWVGSEADIDAVTAVSGSGPAYVFYLV 186

Query: 185 QAMTDAGEKLGLSRETASRLTLQTALGAAQMALSSEVEPAELRRRVTSPNGTTEAAIKSF 244
           + M +AG K GL  + A RL  +T  GA ++   S  + A LR+ VTSP GTT AA+   
Sbjct: 187 ECMAEAGRKAGLEADLAMRLARETVAGAGELLHQSPDDAARLRQNVTSPGGTTAAALAVL 246

Query: 245 QA-NGFEALVEQALNAASQRSAELA 268
            A +G + L ++A+ AA +R+ ELA
Sbjct: 247 MADDGMQPLFDRAIAAARKRAEELA 271


Lambda     K      H
   0.315    0.127    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 187
Number of extensions: 6
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 272
Length adjustment: 25
Effective length of query: 248
Effective length of database: 247
Effective search space:    61256
Effective search space used:    61256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate SMc02677 SMc02677 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.9861.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9861.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.