Align 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) (characterized)
to candidate SM_b21186 SM_b21186 4-aminobutyrate aminotransferase
Query= BRENDA::Q0K2K2 (423 letters) >FitnessBrowser__Smeli:SM_b21186 Length = 422 Score = 544 bits (1401), Expect = e-159 Identities = 267/416 (64%), Positives = 316/416 (75%) Query: 8 LNQRRTLATPRGVGVMCDFYADRAENATLWDVEGRAYTDFAAGIAVLNTGHRHPRVMQAI 67 L R+ A RGVG+ YADRAENA +WD EG Y DFAAGIAV+NTGHRHP+V+ A+ Sbjct: 4 LTDRKNAAISRGVGMTTQVYADRAENAEIWDKEGNRYIDFAAGIAVVNTGHRHPKVIAAV 63 Query: 68 AAQLERFTHTAYQIVPYQGYVTLAERINALVPIQGLNKTALFTTGAEAVENAIKIARAHT 127 AQL+RFTHT +Q+VPY+ YV LAER+NA+VP KT TTGAEAVENA+KIARA T Sbjct: 64 KAQLDRFTHTCHQVVPYENYVHLAERLNAIVPGDFAKKTIFVTTGAEAVENAVKIARAAT 123 Query: 128 GRPGVIAFSGAFHGRTLLGMALTGKVAPYKIGFGPFPSDIYHAPFPSALHGVSTERALQA 187 GR V+AF G FHGRT +GMALTGKV PYK+GFG P+D++HAPFP LHGV+ E++L A Sbjct: 124 GRQAVVAFGGGFHGRTFMGMALTGKVVPYKVGFGAMPADVFHAPFPIELHGVTVEQSLSA 183 Query: 188 LEGLFKTDIDPARVAAIIVEPVQGEGGFQAAPADFMRGLRAVCDQHGIVLIADEVQTGFG 247 L+ LF D+DPARVAAII+EPVQGEGGF P FM+ LR VCDQHGI+LIADEVQTGF Sbjct: 184 LKKLFAADVDPARVAAIIIEPVQGEGGFYPVPTAFMKALREVCDQHGILLIADEVQTGFA 243 Query: 248 RTGKMFAMSHHDVEPDLITMAKSLAGGMPLSAVSGRAAIMDAPLPGGLGGTYAGNPLAVA 307 RTGK+FAM HH V PDL TMAKSLAGG PL+AV+GRA IMDAP PGGLGGTY GNPL +A Sbjct: 244 RTGKLFAMEHHGVAPDLTTMAKSLAGGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIA 303 Query: 308 AAHAVIDVIEEEKLCERSASLGQQLREHLLAQRKHCPAMAEVRGLGSMVAAEFCDPATGQ 367 AAHAV+DVI EE LCER+ LG +L++ L A R+ P + ++RG G M A EF D T Sbjct: 304 AAHAVLDVIAEENLCERANQLGNRLKQRLAAIREKAPEIVDIRGPGFMNAVEFNDVRTNL 363 Query: 368 PSAEHAKRVQTRALEAGLVLLTCGTYGNVIRFLYPLTIPQAQFDAALAVLTQALAE 423 PSAE A +V+ ALE GL+LLTCG +GNVIRFL P+TI F AL + ++ E Sbjct: 364 PSAEFANKVRLLALEKGLILLTCGVHGNVIRFLAPITIQDEVFAEALDTIEASILE 419 Lambda K H 0.321 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 603 Number of extensions: 17 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 423 Length of database: 422 Length adjustment: 32 Effective length of query: 391 Effective length of database: 390 Effective search space: 152490 Effective search space used: 152490 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.9 bits)
Align candidate SM_b21186 SM_b21186 (4-aminobutyrate aminotransferase)
to HMM TIGR00700 (gabT: 4-aminobutyrate transaminase (EC 2.6.1.19))
../bin/blast/fastacmd -i /tmp/list.5698.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5698.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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