Align Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 (characterized)
to candidate SMc03846 SMc03846 aconitate hydratase
Query= SwissProt::P70920 (906 letters) >FitnessBrowser__Smeli:SMc03846 Length = 896 Score = 1298 bits (3359), Expect = 0.0 Identities = 652/905 (72%), Positives = 742/905 (81%), Gaps = 13/905 (1%) Query: 3 SLDSFKCKKTLKVGAKTYVYYSLPTAEKNGLKGISKLPYSMKVLLENLLRNEDGRSVKKA 62 SLDSF C+ TL V YVYYSLP AE NGL GISKLPYSMKVLLENLLRNEDGRSV K Sbjct: 4 SLDSFNCRSTLTVNGVDYVYYSLPKAEANGLAGISKLPYSMKVLLENLLRNEDGRSVTKK 63 Query: 63 DIVAVSKWLRKK-SLEHEIAFRPARVLMQDFTGVPAVVDLAAMRNAMQKLGGDAEKINPL 121 DI ++ WL K + E+EIA+RPARVLMQDFTGVPAVVDLAAMR+AM LGGD EKINPL Sbjct: 64 DIENIAAWLGDKGTAENEIAYRPARVLMQDFTGVPAVVDLAAMRDAMVSLGGDPEKINPL 123 Query: 122 VPVDLVIDHSVIVNFFGDNKAFAKNVTEEYKQNQERYEFLKWGQAAFSNFSVVPPGTGIC 181 VPVDLVIDHSVIV+ FG AFA+NV EY++N ERY FLKWGQ AF NF VVPPGTGIC Sbjct: 124 VPVDLVIDHSVIVDEFGTPTAFARNVELEYQRNGERYRFLKWGQQAFKNFRVVPPGTGIC 183 Query: 182 HQVNLEYLSQTVWTKKEKMTVGKKTGTFEVAYPDSLVGTDSHTTMVNGLAVLGWGVGGIE 241 HQVNLEYL Q VWT++E V AYPD+ VGTDSHTTM+NGL VLGWGVGGIE Sbjct: 184 HQVNLEYLGQAVWTREEDGEV--------TAYPDTCVGTDSHTTMINGLGVLGWGVGGIE 235 Query: 242 AEACMLGQPLSMLLPNVVGFKLKGAMKEGVTATDLVLTVTQMLRKLGVVGKFVEFFGPGL 301 AEA MLGQP+SMLLP V+GFKL G +KEGVTATDLVLTV QMLRK GVV KFVEFFGPGL Sbjct: 236 AEAAMLGQPVSMLLPEVIGFKLTGKLKEGVTATDLVLTVVQMLRKKGVVSKFVEFFGPGL 295 Query: 302 DHLSVADKATIANMAPEYGATCGFFPVDAAAIDYLKTSGRAAPRVALVQAYAKAQGLFRT 361 D++++AD+ATI NM PEYGATCGFFPVDA I+YL SGR R+ALV+AY+KAQG++R Sbjct: 296 DNMTLADRATIGNMGPEYGATCGFFPVDAETINYLTISGREEQRIALVEAYSKAQGMWRE 355 Query: 362 AKSADPVFTETLTLDLADVVPSMAGPKRPEGRIALPSVAEGFSVALANEYKKTEEPAKRF 421 ++ VFT+TL LDL DVVPSMAGPKRPEGRIAL ++A GF+ AL N+YKK + A R+ Sbjct: 356 GDGSELVFTDTLELDLGDVVPSMAGPKRPEGRIALENIASGFAAALDNDYKKPGQLANRY 415 Query: 422 AVEGKKYEIGHGDVVIAAITSCTNTSNPSVLIGAGLLARNAAAKGLKAKPWVKTSLAPGS 481 AVEG Y++GHGDV IAAITSCTNTSNPSVLI AGLLARNA AKGLK +PWVKTSLAPGS Sbjct: 416 AVEGTDYDLGHGDVAIAAITSCTNTSNPSVLIAAGLLARNAVAKGLKTQPWVKTSLAPGS 475 Query: 482 QVVAAYLADSGLQAHLDKVGFNLVGFGCTTCIGNSGPLPEEISKSINDNGIVAAAVLSGN 541 QVVA YL+ SGLQ LDK+GFNLVGFGCTTCIGNSGPLP EISK+IND G++AA VLSGN Sbjct: 476 QVVAEYLSKSGLQTDLDKLGFNLVGFGCTTCIGNSGPLPTEISKTINDKGLIAAGVLSGN 535 Query: 542 RNFEGRVSPDVQANYLASPPLVVAHALAGSVTKNLAVEPLGEGKDGKPVYLKDIWPTSKE 601 RNFEGR+SPDVQANYLASPPLVVA+ALAGSV K+L EP+GE +DG+PVYL+DIWPTS+E Sbjct: 536 RNFEGRISPDVQANYLASPPLVVAYALAGSVQKDLTKEPIGEDRDGQPVYLRDIWPTSQE 595 Query: 602 INAFMKKFVTASIFKKKYADVFKGDTNWRKIKTVESETYRWNMSSTYVQNPPYFEGMKKE 661 I F+ ++VT ++ KYADVFKGD NW+ ++ +TY W+ STYVQNPPYF GM K+ Sbjct: 596 IQDFIFRYVTRELYATKYADVFKGDANWQAVQVPAGQTYAWDEGSTYVQNPPYFVGMGKK 655 Query: 662 PEPVTDIVEARILAMFGDKITTDHISPAGSIKLTSPAGKYLSEHQVRPADFNQYGTRRGN 721 ++DI AR+L +FGDKITTDHISPAGSIK SPAG YL EH V ADFNQYGTRRGN Sbjct: 656 GAGISDIKNARVLGLFGDKITTDHISPAGSIKAASPAGAYLLEHGVGIADFNQYGTRRGN 715 Query: 722 HEVMMRGTFANIRIKNFMLKGADGNIPEGGLTKHWPDGEQMSIYDAAMKYQQEQVPLVVF 781 HEVMMRGTFANIRI+N ML G +G EGG T H+P E+MSIYDAAM+Y++E VPLV+F Sbjct: 716 HEVMMRGTFANIRIRNHML-GPNGK--EGGYTIHYPSKEEMSIYDAAMQYKEEGVPLVIF 772 Query: 782 AGAEYGNGSSRDWAAKGTRLLGVRAVICQSFERIHRSNLVGMGVLPLTFEEGTSWSSLGL 841 AG EYGNGSSRDWAAKGT LLGV+AVI QSFERIHRSNLVGMGV+P FEEG +W SLGL Sbjct: 773 AGVEYGNGSSRDWAAKGTNLLGVKAVIAQSFERIHRSNLVGMGVVPFVFEEGMTWESLGL 832 Query: 842 KGDEKVTLRGLVGDLKPRQKLTAEIVSGDGSLQRVSLLCRIDTLDELDYYRNGGILHYVL 901 KGDE VT+ L +++PR+K A+I GDGS++ V L+CRIDTLDE+ Y NGGIL VL Sbjct: 833 KGDEVVTIENL-ANVQPREKRVAKITYGDGSVKEVPLICRIDTLDEVTYVNNGGILQTVL 891 Query: 902 RKLAA 906 R LAA Sbjct: 892 RDLAA 896 Lambda K H 0.317 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 2261 Number of extensions: 88 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 906 Length of database: 896 Length adjustment: 43 Effective length of query: 863 Effective length of database: 853 Effective search space: 736139 Effective search space used: 736139 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 56 (26.2 bits)
Align candidate SMc03846 SMc03846 (aconitate hydratase)
to HMM TIGR01341 (acnA: aconitate hydratase 1 (EC 4.2.1.3))
../bin/blast/fastacmd -i /tmp/list.21201.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21201.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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