Align phosphopentomutase (EC 5.4.2.7) (characterized)
to candidate SMc04119 SMc04119 phosphopentomutase
Query= BRENDA::P0A6K6 (407 letters) >FitnessBrowser__Smeli:SMc04119 Length = 406 Score = 471 bits (1213), Expect = e-137 Identities = 233/408 (57%), Positives = 299/408 (73%), Gaps = 5/408 (1%) Query: 1 MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEADNG--RKGPLNLPNLTR 58 M RAF+ VLDSFGIG DAE FGD+GADTLGHIAE CA G AD R+GPL+LPN++ Sbjct: 1 MARAFLFVLDSFGIGNAPDAEAFGDLGADTLGHIAEFCAAGAADRAGLREGPLHLPNMSA 60 Query: 59 LGLAKAHEGSTGFIPAGMDGNAEVIGAYAWAHEMSSGKDTPSGHWEIAGVPVLFEWGYFS 118 LGL A +TG +PAGM V G Y A E+S GKDTPSGHWEIAG PV F+WGYF Sbjct: 61 LGLMHAARLATGRLPAGMALPERVYGIYGAASEVSRGKDTPSGHWEIAGTPVTFDWGYFP 120 Query: 119 DHENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQI 178 ++FP EL++ + ++PG LGNCH+SGT I+ + GEEHM++GKPI YTS+DSVFQI Sbjct: 121 AEGDAFPPELVEAICREGDVPGILGNCHASGTDIIARHGEEHMRSGKPICYTSSDSVFQI 180 Query: 179 ACHEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPP 238 A HE+TFGL++L LCE+ R + + YNIGRVIARPF+G G+F RTGNR D +V PP Sbjct: 181 AAHEQTFGLERLLNLCEVVRRLVDD--YNIGRVIARPFVGSDPGSFTRTGNRRDYSVLPP 238 Query: 239 APTVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDNTIV 298 PTVL +L E V ++GKI DI+A+ G+T+ KA G ALFDA+++ ++EA D +V Sbjct: 239 EPTVLDRL-QEAGRTVHAIGKIGDIFAHQGVTRLTKANGNMALFDASLEAIEEAEDGALV 297 Query: 299 FTNFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMSLLRDDDILILTADHGCDPTWTGTD 358 FTNFVDFD +GHRRDV+GYAA LE FD RLP+L L+ D++ILTADHGCDPTW GTD Sbjct: 298 FTNFVDFDMLYGHRRDVSGYAAALEAFDARLPDLDRRLKPGDMVILTADHGCDPTWRGTD 357 Query: 359 HTREHIPVLVYGPKVKPGSLGHRETFADIGQTLAKYFGTSDMEYGKAM 406 HTRE +PVL++GP ++ S G ++FA IG+T+A++ G +G+++ Sbjct: 358 HTRERVPVLMFGPTLRSRSFGIADSFAHIGETVARHLGIGVGPHGRSL 405 Lambda K H 0.318 0.138 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 633 Number of extensions: 35 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 407 Length of database: 406 Length adjustment: 31 Effective length of query: 376 Effective length of database: 375 Effective search space: 141000 Effective search space used: 141000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate SMc04119 SMc04119 (phosphopentomutase)
to HMM TIGR01696 (deoB: phosphopentomutase (EC 5.4.2.7))
../bin/blast/fastacmd -i /tmp/list.26432.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.26432.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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