Align triose-phosphate isomerase (EC 5.3.1.1) (characterized)
to candidate SMc01614 SMc01614 triosephosphate isomerase
Query= BRENDA::Q7X216 (265 letters) >FitnessBrowser__Smeli:SMc01614 Length = 255 Score = 203 bits (517), Expect = 3e-57 Identities = 116/255 (45%), Positives = 158/255 (61%), Gaps = 8/255 (3%) Query: 5 IWLGTSWKMNKPLSQAMAWCETLAARMPEGCHPAIQPFVIPSFTAIQPVSHFLQTHQLPL 64 +W+GTSWKMNK L++AM + + LAA + IQ FVIP FTA + V L+ + + Sbjct: 6 LWVGTSWKMNKTLAEAMVFADGLAAA-DDARDQRIQRFVIPPFTAARQVKERLKATSVKV 64 Query: 65 LTGAQNMHEADQGAWTGEISAAMLAETGATLVELGHSERRAAFNESDAAINRKVHSALGH 124 GAQNMH D GAWTGEIS ML++ +VELGHSERR F E+D + K +A+ H Sbjct: 65 --GAQNMHWDDAGAWTGEISPVMLSDCDLDIVELGHSERREHFGETDRTVGLKTAAAVKH 122 Query: 125 GLRPLICIGDSAEEKRWQVSRESVVRQMKIALYGL-SHQQALRTLIAYEPVWAIGEHGTP 183 GL PLICIG++ ++ + + RQ++ A L + L+AYEPVWAIG +G P Sbjct: 123 GLVPLICIGETLAQREAGEADTVLKRQVEGAFAFLEGAARKAPVLLAYEPVWAIGVNGIP 182 Query: 184 ASPQEAGVIHQALRQALCERFGHETGTRIPLLYGGXVTLQNAVELLRQQEINGLFIGRAA 243 A+ A H+ + + + ER G ++P+LYGG V QN EL+ Q I+GLFIGR+A Sbjct: 183 ATADYADARHRLIGE-VAER---ALGVKVPVLYGGSVNPQNCEELILQPHIDGLFIGRSA 238 Query: 244 WDAQGYCDIVQRVTQ 258 WD GY DI+QRV + Sbjct: 239 WDVGGYLDILQRVAR 253 Lambda K H 0.321 0.133 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 231 Number of extensions: 9 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 265 Length of database: 255 Length adjustment: 24 Effective length of query: 241 Effective length of database: 231 Effective search space: 55671 Effective search space used: 55671 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 47 (22.7 bits)
Align candidate SMc01614 SMc01614 (triosephosphate isomerase)
to HMM TIGR00419 (tpiA: triose-phosphate isomerase (EC 5.3.1.1))
../bin/blast/fastacmd -i /tmp/list.14522.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14522.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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