GapMind for catabolism of small carbon sources

 

Alignments for a candidate for hutI in Sinorhizobium meliloti 1021

Align Imidazolonepropionase (EC 3.5.2.7) (characterized)
to candidate SM_b21166 SM_b21166 imidazolonepropionase

Query= reanno::Smeli:SM_b21166
         (471 letters)



>FitnessBrowser__Smeli:SM_b21166
          Length = 471

 Score =  928 bits (2399), Expect = 0.0
 Identities = 471/471 (100%), Positives = 471/471 (100%)

Query: 1   MPGGVAGARSQRPPPMPILFPCFWPAAPIALSHGSYFSLVIAGIMYIHYWRRRAAPMDGN 60
           MPGGVAGARSQRPPPMPILFPCFWPAAPIALSHGSYFSLVIAGIMYIHYWRRRAAPMDGN
Sbjct: 1   MPGGVAGARSQRPPPMPILFPCFWPAAPIALSHGSYFSLVIAGIMYIHYWRRRAAPMDGN 60

Query: 61  ENPNPARTSLWRNARLATLREELGPLGIIEDGVIAVRGERIVYAGPEAGLPSELARADQV 120
           ENPNPARTSLWRNARLATLREELGPLGIIEDGVIAVRGERIVYAGPEAGLPSELARADQV
Sbjct: 61  ENPNPARTSLWRNARLATLREELGPLGIIEDGVIAVRGERIVYAGPEAGLPSELARADQV 120

Query: 121 FDCEGRWVTPALIDCHTHIVHGGNRAREFQLRLEGATYEEIARAGGGIASTVEATNALSV 180
           FDCEGRWVTPALIDCHTHIVHGGNRAREFQLRLEGATYEEIARAGGGIASTVEATNALSV
Sbjct: 121 FDCEGRWVTPALIDCHTHIVHGGNRAREFQLRLEGATYEEIARAGGGIASTVEATNALSV 180

Query: 181 EALVEAALPRLDTLLAEGVSTVEVKSGYGLNVEAELKMLRAARRLESLRPVRIVTSYLAA 240
           EALVEAALPRLDTLLAEGVSTVEVKSGYGLNVEAELKMLRAARRLESLRPVRIVTSYLAA
Sbjct: 181 EALVEAALPRLDTLLAEGVSTVEVKSGYGLNVEAELKMLRAARRLESLRPVRIVTSYLAA 240

Query: 241 HATPPEFRGRNGDYIAEVVLPGLTAAHAEGLADAVDGFCEGIAFSPAEIASVFGRAKSLG 300
           HATPPEFRGRNGDYIAEVVLPGLTAAHAEGLADAVDGFCEGIAFSPAEIASVFGRAKSLG
Sbjct: 241 HATPPEFRGRNGDYIAEVVLPGLTAAHAEGLADAVDGFCEGIAFSPAEIASVFGRAKSLG 300

Query: 301 LPVKLHAEQLSDLGGAKLAASYGALSADHLEYLDAAGAAAMAKAGTVAVLLPGAFYTLRE 360
           LPVKLHAEQLSDLGGAKLAASYGALSADHLEYLDAAGAAAMAKAGTVAVLLPGAFYTLRE
Sbjct: 301 LPVKLHAEQLSDLGGAKLAASYGALSADHLEYLDAAGAAAMAKAGTVAVLLPGAFYTLRE 360

Query: 361 KQLPPVEALREAGTRIAIATDCNPGTSPLTSLLLTLNMSATLFRLTLEECLAGVTREAAR 420
           KQLPPVEALREAGTRIAIATDCNPGTSPLTSLLLTLNMSATLFRLTLEECLAGVTREAAR
Sbjct: 361 KQLPPVEALREAGTRIAIATDCNPGTSPLTSLLLTLNMSATLFRLTLEECLAGVTREAAR 420

Query: 421 ALGILGETGTIEAGKSADLAIWNIDQPAELIYRIGFNPLRERIFKGERILR 471
           ALGILGETGTIEAGKSADLAIWNIDQPAELIYRIGFNPLRERIFKGERILR
Sbjct: 421 ALGILGETGTIEAGKSADLAIWNIDQPAELIYRIGFNPLRERIFKGERILR 471


Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 935
Number of extensions: 29
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 471
Length adjustment: 33
Effective length of query: 438
Effective length of database: 438
Effective search space:   191844
Effective search space used:   191844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate SM_b21166 SM_b21166 (imidazolonepropionase)
to HMM TIGR01224 (hutI: imidazolonepropionase (EC 3.5.2.7))

Software error:

../bin/blast/fastacmd -i /tmp/list.20258.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20258.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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