Align Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 (characterized)
to candidate SMc01023 SMc01023 triosephosphate isomerase
Query= SwissProt::Q8L1Z5 (254 letters) >FitnessBrowser__Smeli:SMc01023 Length = 256 Score = 295 bits (754), Expect = 8e-85 Identities = 147/254 (57%), Positives = 188/254 (74%) Query: 1 MSPNIRPFIAGNWKMNGTGESLGELRAIAAGISSDLGRLFEALICVPATLLSRAFDILGG 60 M+P+IRP +AGNWKMNGT SL +++A+A G+ DL +ALIC PATLL A + Sbjct: 1 MTPDIRPLVAGNWKMNGTRASLDQIKAMAEGVKGDLSARVDALICPPATLLYVATALCDD 60 Query: 61 ENILLGGQNCHFDDYGPYTGDISAFMLKEAGASHVIIGHSERRTVYQESDAIVRAKVQAA 120 +++G Q+CH G +TG++SA M+ + +HVI+GHSERRT + E DA+VRAK +AA Sbjct: 61 SPLMIGAQDCHQKQSGAHTGEVSAEMVADCFGTHVIVGHSERRTDHGEGDALVRAKTEAA 120 Query: 121 WRAGLVALICVGETLEERKSNKVLDVLTRQLEGSLPDGATAENIIIAYEPVWAVGTGNTA 180 A LVA++CVGET EERK+ + LD+L RQL SLPD ATAEN +IAYEPVWA+GTG T Sbjct: 121 HGADLVAIVCVGETEEERKAGRTLDILKRQLSESLPDQATAENTVIAYEPVWAIGTGLTP 180 Query: 181 TSADVAEVHAFIHHKMHSRFGDEGAKIRLLYGGSVKPSNAFELLSTAHVNGALIGGASLK 240 T +DV E HAF+ ++ SRFG EG K+R+LYGGSVKPSNA EL+ A+V+GALIGGASLK Sbjct: 181 TVSDVEEAHAFMRRELVSRFGAEGGKMRILYGGSVKPSNAKELMGVANVDGALIGGASLK 240 Query: 241 AIDFLTICDVYRKL 254 A DFL I Y +L Sbjct: 241 ADDFLAIYRAYEEL 254 Lambda K H 0.320 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 252 Number of extensions: 12 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 254 Length of database: 256 Length adjustment: 24 Effective length of query: 230 Effective length of database: 232 Effective search space: 53360 Effective search space used: 53360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.7 bits)
Align candidate SMc01023 SMc01023 (triosephosphate isomerase)
to HMM TIGR00419 (tpiA: triose-phosphate isomerase (EC 5.3.1.1))
../bin/blast/fastacmd -i /tmp/list.3257.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.3257.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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