Align dihydrolipoyl dehydrogenase (EC 1.8.1.4) (characterized)
to candidate SMc02487 SMc02487 dihydrolipoamide dehydrogenase
Query= BRENDA::Q9M5K2 (507 letters) >FitnessBrowser__Smeli:SMc02487 Length = 468 Score = 550 bits (1418), Expect = e-161 Identities = 270/465 (58%), Positives = 347/465 (74%), Gaps = 2/465 (0%) Query: 45 DVVIIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAK 104 D+++IG GPGGYV AIKAAQLG+K +EKR GGTCLNVGCIPSKALLH+S M+H+A+ Sbjct: 4 DLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQ 63 Query: 105 HVFANHGVKVSSVEVDLPAMLAQKDTAVKNLTRGVEGLFKKNKVNYVKGYGKFLSPSEVS 164 H GV+V++ +++L M+A KD VK+ GV LFKKNK++ +G GK L +VS Sbjct: 64 HGLEALGVEVANPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVS 123 Query: 165 VDTIDGENVVVKGKHIIVATGSDVKSLPGITI--DEKKIVSSTGALSLTEIPKKLIVIGA 222 V GE V++ K++++ATGSDV +PG+ + DEK IVSSTGAL+L ++P +IV+G Sbjct: 124 VTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVAFDEKTIVSSTGALALEKVPASMIVVGG 183 Query: 223 GYIGLEMGSVWGRLGSEVTVVEFAADIVPAMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282 G IGLE+GSVW RLG++VTVVEF I+ MDGE+ KQ QR L KQ + F L KV G Sbjct: 184 GVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAV 243 Query: 283 SSGDGVKLIVEPAEGGEQTTLEADVVLVSAGRTPFTSGLDLEKIGVETDKGGRILVNERF 342 SGDG K+ EP +GGE TTL+A+VVL++ GR P T GL L K GV D GR+ ++ F Sbjct: 244 KSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHF 303 Query: 343 STNVSGVYAIGDVIPGPMLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTYPEVASVG 402 T+++GVYAIGDV+ GPMLAHKAE++GVA E IAG+ GHV+YD +PGVVYT PEVASVG Sbjct: 304 QTSIAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAGQAGHVNYDVIPGVVYTQPEVASVG 363 Query: 403 KTEEQLKKEGVSYNVGKFPFMANSRAKAIDTAEGMVKILADKETDKILGVHIMSPNAGEL 462 KTEE+LK GV+Y +GKFPF AN RA+A+ +G VKILADKETD++LG HI+ AGE+ Sbjct: 364 KTEEELKAAGVAYKIGKFPFTANGRARAMLQTDGFVKILADKETDRVLGGHIIGFGAGEM 423 Query: 463 IHEAVLAINYDASSEDIARVCHAHPTMSEAIKEAAMATYDKPIHM 507 IHE + + + SSED+ R CHAHPTMSEA+KEAA++T+ KPIHM Sbjct: 424 IHEIAVLMEFGGSSEDLGRTCHAHPTMSEAVKEAALSTFFKPIHM 468 Lambda K H 0.315 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 666 Number of extensions: 31 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 507 Length of database: 468 Length adjustment: 34 Effective length of query: 473 Effective length of database: 434 Effective search space: 205282 Effective search space used: 205282 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (24.6 bits)
Align candidate SMc02487 SMc02487 (dihydrolipoamide dehydrogenase)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.14572.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14572.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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