Align Glucokinase; EC 2.7.1.2; Glucose kinase (uncharacterized)
to candidate SMc02835 SMc02835 glucokinase
Query= curated2:B9JYQ5 (340 letters) >FitnessBrowser__Smeli:SMc02835 Length = 339 Score = 457 bits (1177), Expect = e-133 Identities = 225/338 (66%), Positives = 268/338 (79%), Gaps = 1/338 (0%) Query: 4 PHDNDH-MPFPVLVGDIGGTNARFWILMDAHAAPKEFANIHTADFPTIDQAIQDCILDKS 62 P+ ++H PFP+L+GDIGGTNARF +L DA+ PK+ A I T DF TI++A+Q ILDK+ Sbjct: 2 PNASEHSFPFPILIGDIGGTNARFALLTDAYGEPKQLAPIRTGDFATIEEAMQKGILDKT 61 Query: 63 GFQPRSAILAVAGPIKDDEIPLTNCPWVIRPKAMIADLGFDDVLVVNDFEAQALAAASLG 122 QPRSAILAVAGPIK DEIPLTN WVIRPK M+A LG +DVLV+NDFEAQALA A+ Sbjct: 62 SVQPRSAILAVAGPIKGDEIPLTNAGWVIRPKDMLAGLGLEDVLVINDFEAQALAIAAPA 121 Query: 123 RNDREPIGPLTETSLNSRVILGPGTGLGVGGLLYTHHTWFPVPGEGGHVDIGPRSDRDWQ 182 D IG +SRV+LGPGTGLGV GL+Y HTW PVPGEGGHVDIGPR++RD++ Sbjct: 122 DQDVVQIGGGAVRPFHSRVVLGPGTGLGVAGLVYAQHTWIPVPGEGGHVDIGPRTERDFR 181 Query: 183 IFPHIERIEGRISGEQILCGRGILHLYNAICAADGIEPVWTDPADVTQHALKGNDPVCVE 242 I+P +E IEGR++GEQILCGRGI++LY A+CAA+G E V D A VT AL G D VE Sbjct: 182 IWPFLEPIEGRMAGEQILCGRGIMNLYRAVCAANGEEAVLADQAAVTTSALSGADAAAVE 241 Query: 243 TMTLFVTYLGRIAGDMALVFMARGGVFLSGGISQKIIPLLKSPVFRAAFEDKAPHTEMMK 302 T++LF TYLGR+AGDMAL+FMARGGVFL+GGISQKI+P L P FRAAFEDKAPH+ +M+ Sbjct: 242 TVSLFATYLGRVAGDMALIFMARGGVFLAGGISQKILPALTKPEFRAAFEDKAPHSALMR 301 Query: 303 TIPTFVAIHPQAALSGLAAYARTPSSYGVKHEGRRWQR 340 TIPTF IHP AALSGLAA+ARTP +GV EGRRW+R Sbjct: 302 TIPTFAVIHPMAALSGLAAFARTPRDFGVAMEGRRWRR 339 Lambda K H 0.322 0.140 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 440 Number of extensions: 11 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 340 Length of database: 339 Length adjustment: 28 Effective length of query: 312 Effective length of database: 311 Effective search space: 97032 Effective search space used: 97032 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 49 (23.5 bits)
Align candidate SMc02835 SMc02835 (glucokinase)
to HMM TIGR00749 (glk: glucokinase (EC 2.7.1.2))
../bin/blast/fastacmd -i /tmp/list.28695.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.28695.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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