Align Aminomethyltransferase (EC 2.1.2.10) (characterized)
to candidate SMc02047 SMc02047 glycine cleavage system aminomethyltransferase T
Query= reanno::pseudo13_GW456_L13:PfGW456L13_1866 (374 letters) >FitnessBrowser__Smeli:SMc02047 Length = 379 Score = 416 bits (1068), Expect = e-121 Identities = 221/375 (58%), Positives = 265/375 (70%), Gaps = 9/375 (2%) Query: 6 LLKTPLHALHIELGARMVPFAGYDMPVQYPLGVMKEHQHTRDQAGLFDVSHMGQIRLTGA 65 L TPLHALH+ LGARMVPFAGYDMPVQYP GV+KEH HTR AGLFDVSHMGQI + Sbjct: 7 LKHTPLHALHLSLGARMVPFAGYDMPVQYPEGVLKEHLHTRAAAGLFDVSHMGQIVVRPK 66 Query: 66 N-----AAKALETLVPVDIIDLPVGMQRYAMFTNATGGILDDLMVANLGNDELFLVVNAA 120 + AA ALE LVP D++ L G QRY +FTNA GGILDDLM+ N G D LFLVVNAA Sbjct: 67 SGKIEDAALALEKLVPADVLGLAEGRQRYGLFTNAAGGILDDLMIVNRG-DHLFLVVNAA 125 Query: 121 CKDQDLAHLRKHIGDQCTIEPLFEERALLALQGPAAVTVLARLAPEVAKMTFMQFARVKL 180 CKD DLAHL+ +G C + L +RAL+ALQGP A VL L +V+ M FM L Sbjct: 126 CKDADLAHLKDGLGSVCDVTML-TDRALIALQGPRAGAVLCELWADVSSMRFMDVTEADL 184 Query: 181 LGVDCFVSRSGYTGEDGFEISVPATNAEALARALLAEAEVAAIGLGARDSLRLEAGLCLY 240 V C +SRSGYTGEDGFEIS+PA A + + LL +V IGLGARDSLRLEAGLCLY Sbjct: 185 HDVSCIISRSGYTGEDGFEISIPAEAAVDVTQRLLEHPDVLPIGLGARDSLRLEAGLCLY 244 Query: 241 GHDMNTDTTPIEASLLWAISKPRRADGARAGGFPGAETVFAQQQAGVSRKRVGLLPQERT 300 G+D++T+T+PIEA L WAI K RRA G RAGGFPGA + A+ GVSR+RVGL P+ R Sbjct: 245 GNDIDTNTSPIEAGLEWAIQKSRRAGGERAGGFPGAGRILAELTDGVSRRRVGLRPEGRA 304 Query: 301 PVREGAEIV--NEAGDIIGSVCSGGFGPTLGGPLAMGYVDSAYIALDTPVWAIVRGKKVP 358 PVR A + E G+V SGGFGP++ GP+AMGYVD+ + + T ++A VRGK +P Sbjct: 305 PVRGNANLFADEEGRTAAGTVTSGGFGPSVDGPVAMGYVDAEHAEVGTRLFAEVRGKYLP 364 Query: 359 LLVSKMPFVPQRYYR 373 + V+ +PF+ Q Y R Sbjct: 365 IAVTALPFIKQTYKR 379 Lambda K H 0.321 0.138 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 484 Number of extensions: 25 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 374 Length of database: 379 Length adjustment: 30 Effective length of query: 344 Effective length of database: 349 Effective search space: 120056 Effective search space used: 120056 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate SMc02047 SMc02047 (glycine cleavage system aminomethyltransferase T)
to HMM TIGR00528 (gcvT: glycine cleavage system T protein (EC 2.1.2.10))
../bin/blast/fastacmd -i /tmp/list.27589.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.27589.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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