GapMind for catabolism of small carbon sources

 

Alignments for a candidate for pta in Sinorhizobium meliloti 1021

Align phosphate acetyltransferase (EC 2.3.1.8) (characterized)
to candidate SM_b21532 SM_b21532 phosphate acetyltransferase

Query= BRENDA::Q5LMK3
         (337 letters)



>FitnessBrowser__Smeli:SM_b21532
          Length = 330

 Score =  328 bits (842), Expect = 9e-95
 Identities = 184/327 (56%), Positives = 215/327 (65%)

Query: 6   PIDLLLSDPPARRATVALSEGSDPRVVAGALAAHSAGIADVILVGQAAEIRAALKAQGAP 65
           P+D ++         V L EG DPR+VAGA+ A   G+A + LVG    I   L A  A 
Sbjct: 3   PLDRIIDAARKAPRHVVLPEGEDPRIVAGAVQARREGLAAITLVGNREVITQRLAALDAI 62

Query: 66  ADSLTIHDPDSSPLTAEFAAAYYGLRRHKGVSEAAALAAVRTPLVYAAMLVRGDHAVGTV 125
                I DP  SPLT +FA AY   RR KGV  AAA AAV +PL +AAM+VR   A GTV
Sbjct: 63  PQEFRIEDPACSPLTDDFATAYLERRRSKGVDAAAARAAVLSPLTFAAMMVREGIADGTV 122

Query: 126 GGAVATTSDVVRTAIQVIGAAPGAAMVSSFFLMYPPEAATAHARAMLYSDSGLVIDPSVA 185
           GGAVATT+D VR A+QVIG APG  +VSSFFLM   E   A   A +++D GLV+DP  A
Sbjct: 123 GGAVATTADTVRAALQVIGRAPGVGLVSSFFLMMLCEPHHARKGAFVFADCGLVVDPDAA 182

Query: 186 ELAAIAAASAASCRALLRAEPKIAMLSFSTKGSARHPHVSKVTDALARLRADHPDLDADG 245
            LA IA  SA S   L     K+AMLSFST GSA H  VSKV +A    R   PDL  DG
Sbjct: 183 GLADIARMSAKSYEMLAGERAKVAMLSFSTGGSAAHERVSKVVEATGMARRAEPDLIIDG 242

Query: 246 ELQFDAAFVPSVGASKAPGSDVAGQANVMIFPNLDAGNIGYKITQRLGGYTAIGPVLQGL 305
           ELQFD+AFV +V  +KAP S + G+ANV +FPNLDA NIGYKI QR+GG TAIGP+LQGL
Sbjct: 243 ELQFDSAFVEAVCLTKAPHSALRGEANVFVFPNLDAANIGYKIAQRIGGATAIGPILQGL 302

Query: 306 AKPANDLSRGCVAGDVTQMIAVTVLQA 332
           ++PANDLSRGC A DV  MIAVTV+QA
Sbjct: 303 SRPANDLSRGCTAADVFHMIAVTVVQA 329


Lambda     K      H
   0.317    0.130    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 285
Number of extensions: 5
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 330
Length adjustment: 28
Effective length of query: 309
Effective length of database: 302
Effective search space:    93318
Effective search space used:    93318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate SM_b21532 SM_b21532 (phosphate acetyltransferase)
to HMM TIGR00651 (pta: phosphate acetyltransferase (EC 2.3.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.17864.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.17864.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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