Align Probable 3-hydroxyisobutyrate dehydrogenase; HIBADH; EC 1.1.1.31 (uncharacterized)
to candidate SM_b20751 SM_b20751 3-hydroxyisobutyrate dehydrogenase
Query= curated2:P63936 (294 letters) >FitnessBrowser__Smeli:SM_b20751 Length = 298 Score = 320 bits (819), Expect = 3e-92 Identities = 165/295 (55%), Positives = 202/295 (68%), Gaps = 1/295 (0%) Query: 1 MTTIAFLGLGNMGAPMSANLVGAGHVVRGFDPAPTAASGAAAHGVAVFRSAPEAVAEADV 60 MT IAF+GLGNMG PM+ANLV AGH V GFD + + + AA GV+V S +AV E + Sbjct: 1 MTKIAFIGLGNMGGPMAANLVKAGHAVTGFDLSEASRNAAAKTGVSVAGSIAQAVREMEC 60 Query: 61 VITMLPTGEVVRRCYTDVLAAARPATLFIDSSTISVTDAREVHALAESHGMLQLDAPVSG 120 VITMLP V + ++L P TL IDSSTI V AR+VH AE G LDAPVSG Sbjct: 61 VITMLPASAHVLYVWDELLGFVDPGTLLIDSSTIDVESARKVHGFAEKAGCPSLDAPVSG 120 Query: 121 GVKGAAAATLAFMVGGDESTLRRARPVLEPMAGKIIHCGAAGAGQAAKVCNNMVLAVQQI 180 G GAAAATL FMVGG E R + +LE M KI+HCG AGAGQAAK+CNNM+L V Sbjct: 121 GTAGAAAATLTFMVGGSEGAFSRGKHLLEAMGKKIVHCGDAGAGQAAKICNNMILGVSMA 180 Query: 181 AIAEAFVLAEKLGLSAQSLFDVITGATGNCWAVHTNCPVPGPVPTSPANNDFKPGFSTAL 240 A+ EAFVLAE+LGLS Q+LFDV + ++G CW++ T CPVPGPVPTSPAN +KPGF+ +L Sbjct: 181 AVCEAFVLAERLGLSHQALFDVASTSSGQCWSLTTYCPVPGPVPTSPANGGYKPGFAASL 240 Query: 241 MNKDLGLAMDAVAATGATAPLGSHAADIYAKF-AADHADLDFSAVIHTLRARADA 294 M KDL L+ A +A+GA P+G+ A +Y+ F H DFSA+IH LR +A Sbjct: 241 MLKDLKLSQQAASASGAATPMGAQATQLYSLFEKLGHGAEDFSALIHLLRGNEEA 295 Lambda K H 0.319 0.131 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 285 Number of extensions: 13 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 294 Length of database: 298 Length adjustment: 26 Effective length of query: 268 Effective length of database: 272 Effective search space: 72896 Effective search space used: 72896 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate SM_b20751 SM_b20751 (3-hydroxyisobutyrate dehydrogenase)
to HMM TIGR01692 (mmsB: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31))
../bin/blast/fastacmd -i /tmp/list.13580.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13580.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.