Align Acetate kinase; EC 2.7.2.1; Acetokinase (uncharacterized)
to candidate Synpcc7942_2079 Synpcc7942_2079 acetate kinase
Query= curated2:Q8YU00 (405 letters) >FitnessBrowser__SynE:Synpcc7942_2079 Length = 393 Score = 337 bits (864), Expect = 4e-97 Identities = 189/405 (46%), Positives = 256/405 (63%), Gaps = 19/405 (4%) Query: 1 MKVLILNAGSSSQKSCLYEIPDDALLSEAPQPLWEGKVNWTQDRSVAEIEVKTARGETLH 60 +++L NAGSSS K +EI A E P+W+ +++W DR+ T G+ + Sbjct: 1 LQLLTFNAGSSSYKLSGFEITTAA---EQTDPVWQVQIDWKTDRAAT----LTQPGQPV- 52 Query: 61 ESIYGDSRQAHVTYMLYTLSRGATKVIGQLSEIDVVGHRVVHGGQNYRHSVIITEEVKQA 120 + + R+A + L TL S I V HRVVHGGQ +V+ T E+K Sbjct: 53 QMLDSSDRRAWLEIALETLP--------DRSAIAAVVHRVVHGGQQQAPAVV-TPELKAT 103 Query: 121 IAKLSNLAPAHNPAALEGIEAIEKSLG-DVPQVAVFDTGFHATLPDAAAIYPGPFEWVEQ 179 IA +NLAP HNP L GIE +E+ G +PQ+AVFDT FH +P AAAIY GP+ W EQ Sbjct: 104 IAAAANLAPLHNPLNLAGIEQMEQLFGLAMPQIAVFDTAFHQQMPVAAAIYGGPYHWWEQ 163 Query: 180 GIRRYGFHGISHQYCSARAAQILGRDLASLRIITCHLGNGCSLAAIKNGRSIDTTMGFTP 239 G RRYGFHGISHQY + R AQ+ R L++L+++T HLGNGCSLAAI+NG S+DT+MGF+P Sbjct: 164 GYRRYGFHGISHQYLAERCAQLSDRSLSNLQLVTAHLGNGCSLAAIRNGHSVDTSMGFSP 223 Query: 240 LDGLMMGSRSGAIDPGIIVHLMRQSDYSAERLDYVLNKASGLRGISGVSSDLPQVIEAIT 299 L+GL+MGSRSG +DPG+++HL++Q D S +L VLN+ SGL G+SG S+D+ + A Sbjct: 224 LEGLVMGSRSGTVDPGLLLHLLQQPDCSPSQLSTVLNQQSGLLGLSGRSNDVRALAIAAD 283 Query: 300 QGNYRAQLAWDMYVHRLRSGIGSMLASLGGLDVLVFTAGVGEKSAGIRQAACEAFGFLGL 359 G+ R+QLA + H LR +G+MLASL LD LVF G+GE + A CE F + + Sbjct: 284 AGDQRSQLALAAFTHSLRRHLGAMLASLTRLDALVFAGGIGENYRSLWPAVCEHFAGMPI 343 Query: 360 KLDPEKNQNKPVDIDIATADSTVRVLVIHTQEDWAIAQQCWHLLK 404 +LDPE D I+T DS + V VIH++EDW + Q LL+ Sbjct: 344 RLDPEA-MAVAGDRRISTPDSAITVWVIHSREDWQMVQLALPLLR 387 Lambda K H 0.319 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 428 Number of extensions: 15 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 405 Length of database: 393 Length adjustment: 31 Effective length of query: 374 Effective length of database: 362 Effective search space: 135388 Effective search space used: 135388 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate Synpcc7942_2079 Synpcc7942_2079 (acetate kinase)
to HMM TIGR00016 (ackA: acetate kinase (EC 2.7.2.1))
../bin/blast/fastacmd -i /tmp/list.25858.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.25858.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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