Align ornithine carbamoyltransferase (EC 2.1.3.3) (characterized)
to candidate Synpcc7942_2514 Synpcc7942_2514 ornithine carbamoyltransferase
Query= BRENDA::Q51742 (315 letters) >FitnessBrowser__SynE:Synpcc7942_2514 Length = 305 Score = 303 bits (775), Expect = 4e-87 Identities = 160/312 (51%), Positives = 211/312 (67%), Gaps = 8/312 (2%) Query: 3 VSLAGRDLLCLQDYTAEEIWTILETAKMFKIWQK-IGKPHRLLEGKTLAMIFQKPSTRTR 61 + LAGRDLL L D ++ E+ ILE A K Q + P KTL +IF K STRTR Sbjct: 1 MGLAGRDLLTLADLSSAEVLEILELAATLKSGQTTVHCP------KTLGLIFSKSSTRTR 54 Query: 62 VSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYDHKDVEDLAKY 121 VSF A+ +GG L LN Q+ RGE IADTARVLSRY+DA+ R + +D+E+ A Y Sbjct: 55 VSFSAAIMQMGGQVLDLNPNVTQVGRGEPIADTARVLSRYLDALAIRTFAQQDLEEYAHY 114 Query: 122 ATVPVINGLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGDGNNVAHSLMIAGTKLGAD 181 A +PVIN L+D HPCQ LAD TI E G + + + Y+GDGNNVAHSL++ ++G + Sbjct: 115 ADIPVINALTDDYHPCQILADLQTIQENFGQWQDLTLTYLGDGNNVAHSLLLGCAQVGMN 174 Query: 182 VVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVWASMGQEAEA 241 V +A P Y+P E+++ A+Q A + E+LHDP+ A + A V+YTDVWASMGQE EA Sbjct: 175 VRIACPPDYQPQERIVAKAQQIAGDR-AKVEILHDPIAASQGAHVLYTDVWASMGQEEEA 233 Query: 242 EERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDSPNSVVWDQAENRLHA 301 + R K F P+Q+N+ L++ A P + +HCLPAHR EE+T +V++ S VWDQAENRLHA Sbjct: 234 QARVKAFTPYQLNQALLEKADPAAIVLHCLPAHREEEITAEVLEGSQSRVWDQAENRLHA 293 Query: 302 QKAVLALVMGGI 313 QKAVLAL++G I Sbjct: 294 QKAVLALLLGAI 305 Lambda K H 0.319 0.134 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 283 Number of extensions: 14 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 315 Length of database: 305 Length adjustment: 27 Effective length of query: 288 Effective length of database: 278 Effective search space: 80064 Effective search space used: 80064 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate Synpcc7942_2514 Synpcc7942_2514 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))
../bin/blast/fastacmd -i /tmp/list.22746.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.22746.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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