Align Deoxyribose-phosphate aldolase; DERA; EC 4.1.2.4; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase (uncharacterized)
to candidate Synpcc7942_0983 Synpcc7942_0983 deoxyribose-phosphate aldolase
Query= curated2:Q5N4L8 (228 letters) >FitnessBrowser__SynE:Synpcc7942_0983 Length = 228 Score = 454 bits (1167), Expect = e-133 Identities = 228/228 (100%), Positives = 228/228 (100%) Query: 1 MAELSSDFDLAPYIEHSLLDPAATLEQIDQLCQEADRYHFAAVCLFPWVVRQAREWLNGR 60 MAELSSDFDLAPYIEHSLLDPAATLEQIDQLCQEADRYHFAAVCLFPWVVRQAREWLNGR Sbjct: 1 MAELSSDFDLAPYIEHSLLDPAATLEQIDQLCQEADRYHFAAVCLFPWVVRQAREWLNGR 60 Query: 61 SPRLCTVIDFPNGASTAASKVYAAQEAVENGAQELNVVVNLGWLRSDRADLVHQELAEIV 120 SPRLCTVIDFPNGASTAASKVYAAQEAVENGAQELNVVVNLGWLRSDRADLVHQELAEIV Sbjct: 61 SPRLCTVIDFPNGASTAASKVYAAQEAVENGAQELNVVVNLGWLRSDRADLVHQELAEIV 120 Query: 121 EATGVPIKAILEATRLNPSELEQLTDLCLDAGVTMLQTSTGWFGGATPALVQQLRQLTRN 180 EATGVPIKAILEATRLNPSELEQLTDLCLDAGVTMLQTSTGWFGGATPALVQQLRQLTRN Sbjct: 121 EATGVPIKAILEATRLNPSELEQLTDLCLDAGVTMLQTSTGWFGGATPALVQQLRQLTRN 180 Query: 181 RVGIHAAGGIRTWDQAAALVEAGAIRLGTSYGPMILQQRLAASTPAPA 228 RVGIHAAGGIRTWDQAAALVEAGAIRLGTSYGPMILQQRLAASTPAPA Sbjct: 181 RVGIHAAGGIRTWDQAAALVEAGAIRLGTSYGPMILQQRLAASTPAPA 228 Lambda K H 0.319 0.132 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 340 Number of extensions: 5 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 228 Length of database: 228 Length adjustment: 23 Effective length of query: 205 Effective length of database: 205 Effective search space: 42025 Effective search space used: 42025 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 46 (22.3 bits)
Align candidate Synpcc7942_0983 Synpcc7942_0983 (deoxyribose-phosphate aldolase)
to HMM TIGR00126 (deoC: deoxyribose-phosphate aldolase (EC 4.1.2.4))
../bin/blast/fastacmd -i /tmp/list.14932.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14932.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.