Align Glucokinase; EC 2.7.1.2; Glucose kinase (uncharacterized)
to candidate Synpcc7942_0221 Synpcc7942_0221 glucokinase
Query= curated2:B2J224 (341 letters) >FitnessBrowser__SynE:Synpcc7942_0221 Length = 345 Score = 347 bits (890), Expect = e-100 Identities = 188/344 (54%), Positives = 232/344 (67%), Gaps = 6/344 (1%) Query: 1 MTLLLAGDIGGTKTILQLVETSDSQGLHTIYQESYHSADFPDLVPIVQQFLI---KANTP 57 MTLLLAGDIGGTKT L L SD L ++Q S+ SA +PDLVP+VQ+FL A Sbjct: 1 MTLLLAGDIGGTKTNLMLAIASDCDRLEPLHQASFASAAYPDLVPMVQEFLAAAPSAEVR 60 Query: 58 IPEKACFAIAGPIVKNTAKLTNLAWFLDTERLQQELGIPHIYLINDFAAVGYGISGLQKQ 117 P ACF IAGP+V TAKLTNL W L RL +ELGI + LINDFAA+ YG+ GL + Sbjct: 61 SPVVACFGIAGPVVHGTAKLTNLPWQLSEARLAKELGIAQVALINDFAAIAYGLPGLTAE 120 Query: 118 DLHPLQVGKPQPETPIGIIGAGTGLGQGFLIKQGNNYQVFPSEGGHADFAPRNEIEFQLL 177 D +QVG+ P PI I+GAGTGLG+GF+I QVF SEG HADFAP+ E+E +LL Sbjct: 121 DQVVVQVGEADPAAPIAILGAGTGLGEGFIIPTAQGRQVFGSEGSHADFAPQTELESELL 180 Query: 178 KYLLDKHDIQRISVERVVSGMGIVAIYQFLRDRKFAAESPDIAQIVRTWEQEAGQEEKSV 237 +L + + I+ ISVERVVSG GI AIY FLRDR E+P + I W+ Q + Sbjct: 181 HFLRNFYAIEHISVERVVSGQGIAAIYAFLRDRHPDQENPALGAIASAWQTGGDQ---AP 237 Query: 238 DPGAAIGTAALEKRDRLSEQTLQLFIEAYGAEAGNLALKLLPYGGLYIAGGIAPKILPLI 297 D AA+ AAL RD L+ Q +Q+F+ AYGAEAGNLALKLL YGG+Y+AGGIA KILPL+ Sbjct: 238 DLAAAVSQAALSDRDPLALQAMQIFVSAYGAEAGNLALKLLSYGGVYVAGGIAGKILPLL 297 Query: 298 QNSGFLLNFTQKGRMRPLLEEIPVYIILNPQVGLIGAALCAARL 341 + FL F KGR++ LL +P+ I+ N +VGLIGA L AA + Sbjct: 298 TDGTFLQAFQAKGRVKGLLTRMPITIVTNHEVGLIGAGLRAAAI 341 Lambda K H 0.320 0.140 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 349 Number of extensions: 12 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 341 Length of database: 345 Length adjustment: 29 Effective length of query: 312 Effective length of database: 316 Effective search space: 98592 Effective search space used: 98592 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate Synpcc7942_0221 Synpcc7942_0221 (glucokinase)
to HMM TIGR00749 (glk: glucokinase (EC 2.7.1.2))
../bin/blast/fastacmd -i /tmp/list.14464.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14464.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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