Align dihydrolipoyl dehydrogenase (EC 1.8.1.4) (characterized)
to candidate Synpcc7942_1198 Synpcc7942_1198 dihydrolipoamide dehydrogenase
Query= BRENDA::A0A0K9R8G5 (565 letters) >FitnessBrowser__SynE:Synpcc7942_1198 Length = 479 Score = 556 bits (1434), Expect = e-163 Identities = 284/474 (59%), Positives = 358/474 (75%), Gaps = 9/474 (1%) Query: 81 FDYDLLIIGAGVGGHGAALHAVEKGLKTAIIEGDVMGGTCVNRGCVPSKALLAVSGRMRE 140 FDYD+++IGAG GG AA HA EKGLKTAI+E +GGTCVNRGCVPSKALLA SGR+RE Sbjct: 5 FDYDVIVIGAGYGGFDAAKHACEKGLKTAIVEARDLGGTCVNRGCVPSKALLAASGRVRE 64 Query: 141 LQNEQHLKSFGIQVGAANYDRQGVADHASNLASKIRGNLTNSLKALGVDILTGFGTILGP 200 + + HL++FGIQV ++DRQ +ADHA+NL +R NL N+LK LG +IL G G + G Sbjct: 65 ITDTDHLQNFGIQVQGVSFDRQAIADHAANLVDTVRTNLGNTLKRLGAEILMGRGRLAGS 124 Query: 201 QKVQF----GKDNIVTAKDIIIATGSVPFVPRGIEVDGKTVITSDHALKLESVPDWIAIV 256 Q+V G + +A+D+I+ATGS PFVP GIE+DGKTV TSD ALKLE++P WIAI+ Sbjct: 125 QRVTVTAADGTEKTYSARDVILATGSDPFVPPGIEIDGKTVFTSDDALKLETLPQWIAII 184 Query: 257 GSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEVSKLAQRILINPRKIDYHTGVFAT 316 GSGYIGLEFSDVYTALG EVT IEALD+L+P FDP+V+K+AQR L++ R I+ TGV A Sbjct: 185 GSGYIGLEFSDVYTALGCEVTMIEALDRLLPTFDPDVAKVAQRSLLDGRDIETRTGVLAR 244 Query: 317 KITPAKDGKPVTIELTDAKTKEHKDTLEVDAALIATGRAPYTQGLGLESINV-VTQRGFV 375 KITP G PV IEL D +TKE + LEVDA L+ATGR P T+ LGLE++ V V +RGF+ Sbjct: 245 KITP---GSPVVIELADFETKELVEVLEVDACLVATGRIPSTKNLGLETVAVEVDRRGFI 301 Query: 376 PVDDRMRVIDANGKLVPNLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPA 435 PVDD MRV+ + K VP+L+ +GDA GK+MLAHAA+AQG+ +E +TG +++ SIPA Sbjct: 302 PVDDGMRVL-RDSKPVPHLFAVGDATGKLMLAHAAAAQGVVAIENITGHPRSVDYRSIPA 360 Query: 436 ACFTHPEISMVGLTEPQAREKAEKEGFPVSVAKTSFKANSKALAENEAEGIAKLIYRPDN 495 A FTHPEIS VGL+E A+ +EGF V ++ FKANSKALAE +A+G AK+++R D Sbjct: 361 ATFTHPEISSVGLSEADAKALGGQEGFEVGSVRSYFKANSKALAEADADGFAKVLFRKDT 420 Query: 496 GEILGVHIFGLHAADLIHEASNAIAMGTPIQDLKLAVHAHPTLSEVLDELYKAA 549 GE+LG HIFGLHAADLI E +NAIA +++L VH HPTLSEV++ YK A Sbjct: 421 GEVLGAHIFGLHAADLIQEVANAIARRQSVKELAFEVHTHPTLSEVIESAYKQA 474 Lambda K H 0.316 0.133 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 709 Number of extensions: 28 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 565 Length of database: 479 Length adjustment: 35 Effective length of query: 530 Effective length of database: 444 Effective search space: 235320 Effective search space used: 235320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (24.6 bits)
Align candidate Synpcc7942_1198 Synpcc7942_1198 (dihydrolipoamide dehydrogenase)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.22101.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.22101.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.