Align Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) (characterized)
to candidate GFF1325 PS417_06735 3-oxoadipate enol-lactonase
Query= reanno::pseudo3_N2E3:AO353_17230 (266 letters) >FitnessBrowser__WCS417:GFF1325 Length = 263 Score = 458 bits (1178), Expect = e-134 Identities = 226/261 (86%), Positives = 243/261 (93%) Query: 1 VGFVQLADGELKYQLDGPEHAPVLVLSNSLGTNLHMWDVQIPAFTKHFRVLRFDTRGHGR 60 + FVQLA+GEL YQLDGPE APVLVLSNSLGT+LHMWD+QIPAFT+HFRVLRFDTRGHG+ Sbjct: 1 MAFVQLAEGELHYQLDGPEGAPVLVLSNSLGTDLHMWDLQIPAFTQHFRVLRFDTRGHGK 60 Query: 61 SLVTPGPYSIEQLGRDVLALLDALNIERAHFCGLSMGGLIGQWLGINAGERLHKLVVCNT 120 SLVTPGPYSIEQLG+DV+ALLDAL+I+RAHFCGLSMGGLIGQWLGINAG+RL +LVVCNT Sbjct: 61 SLVTPGPYSIEQLGQDVIALLDALDIQRAHFCGLSMGGLIGQWLGINAGQRLQRLVVCNT 120 Query: 121 AAKIGDPSVWNPRIETVLRDGPAAMVALRDASIARWFTPDFAQANPAVAKQITDMLAATS 180 AAKIG P VWNPRIE VLRDG AAMVALRDASIARWFT DFA ANP AKQITDMLAATS Sbjct: 121 AAKIGTPEVWNPRIEMVLRDGAAAMVALRDASIARWFTADFAAANPYQAKQITDMLAATS 180 Query: 181 PQGYAANCAAVRDADFREQLASITVPTLVIAGTEDAVTPPSGGRFIQERVRGAEYAEFYA 240 P+GYAANCAAVRDADFREQLASITVPTLVIAGTEDAVTPP+G FIQ V+GAEYAEFYA Sbjct: 181 PEGYAANCAAVRDADFREQLASITVPTLVIAGTEDAVTPPAGSHFIQNHVQGAEYAEFYA 240 Query: 241 AHLSNVQAGSAFSDRVLSFLL 261 AHLSNVQAG+AFSD V+ FLL Sbjct: 241 AHLSNVQAGAAFSDCVIEFLL 261 Lambda K H 0.321 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 358 Number of extensions: 5 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 266 Length of database: 263 Length adjustment: 25 Effective length of query: 241 Effective length of database: 238 Effective search space: 57358 Effective search space used: 57358 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 47 (22.7 bits)
Align candidate GFF1325 PS417_06735 (3-oxoadipate enol-lactonase)
to HMM TIGR02427 (pcaD: 3-oxoadipate enol-lactonase (EC 3.1.1.24))
../bin/blast/fastacmd -i /tmp/list.5504.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5504.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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