Align arginine deiminase (EC 3.5.3.6) (characterized)
to candidate GFF4361 PS417_22330 arginine deiminase
Query= BRENDA::P13981 (418 letters) >FitnessBrowser__WCS417:GFF4361 Length = 418 Score = 724 bits (1870), Expect = 0.0 Identities = 343/418 (82%), Positives = 384/418 (91%) Query: 1 MSTEKTKLGVHSEAGKLRKVMVCSPGLAHQRLTPSNCDELLFDDVIWVNQAKRDHFDFVT 60 M+TEK K GVHSEAGKLRKVMVCSPGLAHQRLTP+NCDELLFDDV+WV QAKRDHFDFVT Sbjct: 1 MTTEKVKYGVHSEAGKLRKVMVCSPGLAHQRLTPNNCDELLFDDVLWVAQAKRDHFDFVT 60 Query: 61 KMRERGIDVLEMHNLLTETIQNPEALKWILDRKITADSVGLGLTSELRSWLESLEPRKLA 120 KMRER IDVLEMHNLLT+ + PEAL WIL+RKITA++VGLGL E+ SWL SLEPRK++ Sbjct: 61 KMRERDIDVLEMHNLLTDIVAIPEALDWILERKITANTVGLGLVDEVSSWLRSLEPRKIS 120 Query: 121 EYLIGGVAADDLPASEGANILKMYREYLGHSSFLLPPLPNTQFTRDTTCWIYGGVTLNPM 180 E+LIGGV+ADDLP+S G ++M+R++LGHSSF+LPPLPNTQFTRDTTCWIYGGVTLNPM Sbjct: 121 EFLIGGVSADDLPSSFGGKTIEMFRDFLGHSSFILPPLPNTQFTRDTTCWIYGGVTLNPM 180 Query: 181 YWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDKDHGSSTLEGGDVMPIGNGVVLIGM 240 YWPARRQETLL +AIYKFHPEF NA+F+IWYGDPD++HG+STLEGGDVMPIGNGVVLIGM Sbjct: 181 YWPARRQETLLASAIYKFHPEFTNADFQIWYGDPDQEHGASTLEGGDVMPIGNGVVLIGM 240 Query: 241 GERSSRQAIGQVAQSLFAKGAAERVIVAGLPKSRAAMHLDTVFSFCDRDLVTVFPEVVKE 300 GERSS QAIGQ+A++LF A E+VIVAGLPKSRAAMHLDTVFSFCDRDLVTVFPEVV + Sbjct: 241 GERSSHQAIGQLARNLFKNKAVEKVIVAGLPKSRAAMHLDTVFSFCDRDLVTVFPEVVNQ 300 Query: 301 IVPFSLRPDPSSPYGMNIRREEKTFLEVVAESLGLKKLRVVETGGNSFAAEREQWDDGNN 360 IVPF+LRPD S P+G++I+RE+ FLE VA +L LK LRVVETGGNSFAAEREQWDDGNN Sbjct: 301 IVPFTLRPDESKPHGIDIQREKTNFLETVAAALNLKALRVVETGGNSFAAEREQWDDGNN 360 Query: 361 VVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASELGRGRGGGHCMTCPIVRDPIDY 418 VV +EPGVV+GYDRNTYTNTLLRKAGVEVITISA ELGRGRGGGHCMTCPI+RDPIDY Sbjct: 361 VVAVEPGVVIGYDRNTYTNTLLRKAGVEVITISAGELGRGRGGGHCMTCPIIRDPIDY 418 Lambda K H 0.319 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 660 Number of extensions: 15 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 418 Length of database: 418 Length adjustment: 32 Effective length of query: 386 Effective length of database: 386 Effective search space: 148996 Effective search space used: 148996 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate GFF4361 PS417_22330 (arginine deiminase)
to HMM TIGR01078 (arcA: arginine deiminase (EC 3.5.3.6))
../bin/blast/fastacmd -i /tmp/list.32425.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.32425.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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