Align Arginine N-succinyltransferase; AST; AOST; EC 2.3.1.109 (characterized)
to candidate GFF4236 PS417_21700 arginine N-succinyltransferase
Query= SwissProt::P0AE37 (344 letters) >FitnessBrowser__WCS417:GFF4236 Length = 341 Score = 331 bits (849), Expect = 1e-95 Identities = 168/342 (49%), Positives = 234/342 (68%), Gaps = 2/342 (0%) Query: 2 MVIRPVERSDVSALMQLASKTGGGLTSLPANEATLSARIERAIKTWQGELPKSEQGYVFV 61 M++RPV SD+ AL+ LA TG GLT+LPANE L+ R+ A KT++G+ + + Y+FV Sbjct: 1 MIVRPVRSSDLPALIDLARSTGTGLTTLPANEERLTHRVGWAEKTFRGDAGRGDADYLFV 60 Query: 62 LEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSE 121 LE+ E G V GI AI AVGL +PWYN+RVG V AS+ELN+Y +PTLFL+ND TG+SE Sbjct: 61 LENDE-GRVVGISAIAGAVGLREPWYNFRVGLTVSASQELNIYREIPTLFLANDLTGNSE 119 Query: 122 LCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKFNDKVVAEMRGVIDEHGYSPFWQSLGK 181 LC+LFL D+R NG +L+K+R +F+A F F +K++AEMRGV ++ G SPFW+SLG+ Sbjct: 120 LCSLFLHADYRTGLNGRMLAKARLLFIAEFPHLFGNKIIAEMRGVSNDAGRSPFWESLGR 179 Query: 182 RFFSMDFSRADFLCGTGQKAFIAELMPKHPIYTHFLSQEAQDVIGQVHPQTAPARAVLEK 241 FF M+FS+AD+L G G KAFIAELMPK P+Y+ FLS++A++VIG+VHP T PA ++L+ Sbjct: 180 HFFKMEFSQADYLTGVGNKAFIAELMPKFPLYSCFLSEDARNVIGKVHPDTEPALSMLKS 239 Query: 242 EGFRYRNYIDIFDGGPTLECDIDRVRAIRKSRLVEVAEGQPAQGDFPACLVANENYHHFR 301 EGF Y+ Y+DIFD GP +EC+ ++RA+R S+ + +A G P D L+ N R Sbjct: 240 EGFSYQGYVDIFDAGPAVECETTKIRAVRDSQSLVLAIGTPGD-DATPFLIHNRKREECR 298 Query: 302 VVLVRTDPATERLILTAAQLDALKCHAGDRVRLVRLCAEEKT 343 + A L++ L+ GD+VR V L A ++ Sbjct: 299 ITAAPARLAAGTLVVDPQTAKRLQLVVGDQVRAVPLSAARES 340 Lambda K H 0.321 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 373 Number of extensions: 19 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 344 Length of database: 341 Length adjustment: 29 Effective length of query: 315 Effective length of database: 312 Effective search space: 98280 Effective search space used: 98280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 49 (23.5 bits)
Align candidate GFF4236 PS417_21700 (arginine N-succinyltransferase)
to HMM TIGR03244 (astA: arginine N-succinyltransferase (EC 2.3.1.109))
../bin/blast/fastacmd -i /tmp/list.10938.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10938.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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