Align acetoacetate-CoA ligase (EC 6.2.1.16) (characterized)
to candidate GFF2382 PS417_12145 acetoacetyl-CoA synthetase
Query= BRENDA::Q9Z3R3 (650 letters) >FitnessBrowser__WCS417:GFF2382 Length = 652 Score = 682 bits (1760), Expect = 0.0 Identities = 352/647 (54%), Positives = 442/647 (68%), Gaps = 7/647 (1%) Query: 7 LWVPDREIVERSPMAEFIDWCGERFGRSFADYDAFHDWSVSERGAFWTAVWEHCKVIGES 66 LW P E + + M +F ER+ +DY A H WS+ R FW A+ ++ V S Sbjct: 5 LWQPSPERIAHTRMDQFRRHINERYSVQLSDYPALHQWSIDRRPDFWRAIVDYFDVQFRS 64 Query: 67 GEKA-LVDGDRMLDARFFPEARLNFAENLLRKTGSGDALIFRGEDKVSYRLTWDELRALV 125 A L++ M A++FP A LNFAE+LLR+ A++ ED +LT+ EL A V Sbjct: 65 PPTAVLIEDAEMPSAQWFPGATLNFAEHLLRRRDGHPAVVALSEDGQREQLTYAELAAHV 124 Query: 126 SRLQQALRAQGIGAGDRVAAMMPNMPETIALMLATASVGAIWSSCSPDFGEQGVLDRFGQ 185 + LQ +LRA G+ GDRVAA MPN +T+ MLAT S+GAIWS SPDFG QGV+DRFGQ Sbjct: 125 AGLQHSLRAAGVVQGDRVAACMPNTWQTLVGMLATTSLGAIWSCSSPDFGTQGVIDRFGQ 184 Query: 186 IAPKLFIVCDGYWYNGKRQDVDSKVRAVAKSLGA--PTVIVPYAGDSAALAP-TVEGGVT 242 I PK+ I C GY Y GK D +K+ + + L + +IVPYA A ++ GV Sbjct: 185 IEPKVLITCAGYRYAGKDIDQSAKLNEILERLPSLEQLIIVPYARPQAQVSDYQTHAGVA 244 Query: 243 L-ADFIAGFQAGPLVFERLPFGHPLYILFSSGTTGVPKCIVHSAGGTLLQHLKEHRFHCG 301 L DF G F +PF HPLYIL+SSGTTGVPKCI+H GG LL HLKEH H Sbjct: 245 LWQDFYQ--PGGEPQFVAVPFDHPLYILYSSGTTGVPKCIIHGTGGVLLTHLKEHGLHAD 302 Query: 302 LRDGERLFYFTTCGWMMWNWLASGLAVGATLCLYDGSPFCPDGNVLFDYAAAERFAVFGT 361 L + LFY+TTCGWMMWNWL S LA+GAT LYDGSPF P L D AE+ +VFGT Sbjct: 303 LSRDDCLFYYTTCGWMMWNWLVSVLAIGATAVLYDGSPFHPGPERLIDLIDAEKISVFGT 362 Query: 362 SAKYIDAVRKGGFTPARTHDLSSLRLMTSTGSPLSPEGFSFVYEGIKPDVQLASISGGTD 421 S K++ + K G P +HDL SL+ + STGSPLSP+ + +VY IK + L+S+SGGTD Sbjct: 363 SPKFLATLEKAGLQPRLSHDLGSLKGLISTGSPLSPQSYDYVYREIKAQLCLSSMSGGTD 422 Query: 422 IVSCFVLGNPLKPVWRGEIQGPGLGLAVDVWNDEGKPVRGEKGELVCTRAFPSMPVMFWN 481 IVSCFV+GNP+ PV RGE+Q L +A++VW+D+G+P+ GEKGELVCTR FP+MP+ WN Sbjct: 423 IVSCFVIGNPVLPVRRGEMQCKSLAMAIEVWDDQGRPLIGEKGELVCTRHFPAMPIGLWN 482 Query: 482 DPDGAKYRAAYFDRFDNVWCHGDFAEWTPHGGIVIHGRSDATLNPGGVRIGTAEIYNQVE 541 DP+ K RA+YF +F VW GD+AE P+G ++IHGRSDA LNPGGVRIGTAEIY QVE Sbjct: 483 DPECKKLRASYFSQFPGVWAQGDYAEQRPNGSLLIHGRSDAVLNPGGVRIGTAEIYRQVE 542 Query: 542 QMDEVAEALCIGQDWEDDVRVVLFVRLARGVELTEALTREIKNRIRSGASPRHVPAKIIA 601 ++ +V E+L IGQ W++DVRVVLFVRL GVEL E L ++I+ IR+ +PRHVPAKI+A Sbjct: 543 KIPQVQESLAIGQRWQEDVRVVLFVRLNEGVELDETLEQQIRQVIRANTTPRHVPAKILA 602 Query: 602 VADIPRTKSGKIVELAVRDVVHGRPVKNKEALANPEALDLFAGLEEL 648 V DIPRT SGKIVELAVR+VVHG PVKN +ALANP+AL+ F EL Sbjct: 603 VTDIPRTISGKIVELAVRNVVHGEPVKNTDALANPQALEQFRDRPEL 649 Lambda K H 0.322 0.139 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1336 Number of extensions: 62 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 650 Length of database: 652 Length adjustment: 38 Effective length of query: 612 Effective length of database: 614 Effective search space: 375768 Effective search space used: 375768 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (25.4 bits)
Align candidate GFF2382 PS417_12145 (acetoacetyl-CoA synthetase)
to HMM TIGR01217 (acetoacetate-CoA ligase (EC 6.2.1.16))
../bin/blast/fastacmd -i /tmp/list.9347.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9347.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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