Align 1-phosphofructokinase (EC 2.7.1.56) (characterized)
to candidate GFF781 PS417_03970 1-phosphofructokinase
Query= reanno::pseudo5_N2C3_1:AO356_07330 (313 letters) >FitnessBrowser__WCS417:GFF781 Length = 306 Score = 447 bits (1149), Expect = e-130 Identities = 232/313 (74%), Positives = 255/313 (81%), Gaps = 7/313 (2%) Query: 1 MAKILTLTLNPALDLTVELARLEPGQVNRSDAMHAHAAGKGVNVAQVLADLGHTLTVSGF 60 MA+ILTLTLNPALDLTV LARLEPG+VNRS+ + HAAGKGVNVAQVLADLGH LTVSGF Sbjct: 1 MARILTLTLNPALDLTVRLARLEPGEVNRSETLLTHAAGKGVNVAQVLADLGHELTVSGF 60 Query: 61 LGEDNAQVFETLFAQRGFVDAFIRVPGETRSNIKLAEQDGRITDLNGPGPMVDAAAQQAL 120 LGE N Q FE L AQRGF DAFIRVPGETRSNIK+AEQDGR+TD+N PGP V AQ AL Sbjct: 61 LGEGNPQAFEALIAQRGFTDAFIRVPGETRSNIKIAEQDGRVTDINAPGPQVTEQAQNAL 120 Query: 121 LARLEQIAPGHDVVVVAGSLPRGVSPQWLQALIARMKALGLNVALDTSGEALRVALAAGP 180 L +L QIAPG D VVVAGSLPRGVSPQW + L+ ++K GL VALDTSGEALR L AGP Sbjct: 121 LDKLAQIAPGFDAVVVAGSLPRGVSPQWFKGLLEQLKRYGLKVALDTSGEALRAGLLAGP 180 Query: 181 WLIKPNTEELADALGCEVVSETAQAQAAQRLHAQGIEHVVISHGADGVNWFSVGAALHAS 240 WL+KPNTEELA+AL A +LH QG+EHVV+S GA GV+W+S AAL A+ Sbjct: 181 WLVKPNTEELAEAL-------DNATDAVSQLHRQGVEHVVVSDGAAGVSWYSPNAALQAT 233 Query: 241 PPKVSVASTVGAGDSLLAGMLHGLLSADTPEQTLRTATAIAAMAVTQIGFGIHDTALLAS 300 PPKV+VASTVGAGDSLLAGMLHGLL+ DTPEQTLR ATAIAAMAVTQIGFGI D A LA Sbjct: 234 PPKVTVASTVGAGDSLLAGMLHGLLTGDTPEQTLRRATAIAAMAVTQIGFGISDHAQLAR 293 Query: 301 LEQGVRVRPLTEQ 313 LE GV+VR LTEQ Sbjct: 294 LESGVQVRSLTEQ 306 Lambda K H 0.317 0.132 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 399 Number of extensions: 8 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 313 Length of database: 306 Length adjustment: 27 Effective length of query: 286 Effective length of database: 279 Effective search space: 79794 Effective search space used: 79794 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate GFF781 PS417_03970 (1-phosphofructokinase)
to HMM TIGR03828 (pfkB: 1-phosphofructokinase (EC 2.7.1.56))
../bin/blast/fastacmd -i /tmp/list.16426.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16426.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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