Align 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (characterized)
to candidate GFF2746 PS417_14005 4-hydroxyphenylpyruvate dioxygenase
Query= reanno::pseudo6_N2E2:Pf6N2E2_456 (358 letters) >FitnessBrowser__WCS417:GFF2746 Length = 358 Score = 685 bits (1767), Expect = 0.0 Identities = 331/358 (92%), Positives = 347/358 (96%) Query: 1 MADLYENPMGLMGFEFIEFASPTPNTLEPIFEIMGFTKVATHRSKDVHLYRQGAINLILN 60 MADLYENPMGLMGFEFIEFASPTP TLEPIFEIMGFTKVATHRSK+VHLYRQG INLILN Sbjct: 1 MADLYENPMGLMGFEFIEFASPTPGTLEPIFEIMGFTKVATHRSKNVHLYRQGEINLILN 60 Query: 61 NEPHSVASYFAAEHGPSVCGMAFRVKDSQKAYKRALELGAQPIHIETGPMELNLPAIKGI 120 NEP+S+ASYFAAEHGPSVCGMAFRVKDSQKAY RALELGAQPIHI+TGPMELNLPAIKGI Sbjct: 61 NEPNSIASYFAAEHGPSVCGMAFRVKDSQKAYNRALELGAQPIHIDTGPMELNLPAIKGI 120 Query: 121 GGAPLYLIDRFGEGSSIYDIDFVFIEGVDRNPVGAGLKIIDHLTHNVYRGRMAYWAGFYE 180 GGAPLY+IDRFGEGSSIYDIDFV++EGV+RNPVGAGLK+IDHLTHNVYRGRM YWA FYE Sbjct: 121 GGAPLYMIDRFGEGSSIYDIDFVYLEGVERNPVGAGLKVIDHLTHNVYRGRMVYWANFYE 180 Query: 181 KLFNFREIRYFDIKGEYTGLTSKAMTAPDGMIRIPLNEESSKGAGQIEEFLMQFNGEGIQ 240 KLFNFRE RYFDIKGEYTGLTSKAM+APDGMIRIPLNEESSKGAGQIEEFLMQFNGEGIQ Sbjct: 181 KLFNFREARYFDIKGEYTGLTSKAMSAPDGMIRIPLNEESSKGAGQIEEFLMQFNGEGIQ 240 Query: 241 HVAFLTDDLVKTWDHLKSIGMRFMTAPPDTYYEMLEGRLPNHGEPVDELQSRGILLDGAS 300 HVAFLTDDLVKTWD LK IGMRFMTAPPDTYYEMLEGRLP+HGEPVD+LQ+RGILLDG+S Sbjct: 241 HVAFLTDDLVKTWDALKKIGMRFMTAPPDTYYEMLEGRLPDHGEPVDQLQARGILLDGSS 300 Query: 301 EQGDKRLLLQIFSETLMGPVFFEFIQRKGDDGFGEGNFKALFESIERDQVRRGVLATE 358 +GDKRLLLQIFSETLMGPVFFEFIQRKGDDGFGEGNFKALFESIERDQVRRGVL + Sbjct: 301 VEGDKRLLLQIFSETLMGPVFFEFIQRKGDDGFGEGNFKALFESIERDQVRRGVLTAD 358 Lambda K H 0.321 0.141 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 676 Number of extensions: 22 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 358 Length of database: 358 Length adjustment: 29 Effective length of query: 329 Effective length of database: 329 Effective search space: 108241 Effective search space used: 108241 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate GFF2746 PS417_14005 (4-hydroxyphenylpyruvate dioxygenase)
to HMM TIGR01263 (hppD: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27))
../bin/blast/fastacmd -i /tmp/list.28533.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.28533.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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