Align Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) (characterized)
to candidate GFF4637 PS417_23725 methylmalonate-semialdehyde dehydrogenase
Query= reanno::pseudo1_N1B4:Pf1N1B4_1229 (505 letters) >FitnessBrowser__WCS417:GFF4637 Length = 505 Score = 944 bits (2441), Expect = 0.0 Identities = 471/505 (93%), Positives = 493/505 (97%) Query: 1 MNASLETTVQKVKLLIDGEWVESQTTEWHDIVNPATQQVLAKVPFATAAEVDAAISAAHR 60 MNAS + +VQ+VKLLI+GEWVES+TTEW DIVNPATQ+VLAKVPFATA EV+AAI AAHR Sbjct: 1 MNASADISVQQVKLLINGEWVESKTTEWQDIVNPATQEVLAKVPFATADEVNAAIDAAHR 60 Query: 61 AFQTWKLTPIGARMRIMLKLQALIREHSKRIAVVLSNEQGKTIADAEGDIFRGLEVVEHA 120 AFQTWKLTPIGARMRIMLKLQALIREHSKRIAVVLSNEQGKTIADAEGDIFRGLEVVEHA Sbjct: 61 AFQTWKLTPIGARMRIMLKLQALIREHSKRIAVVLSNEQGKTIADAEGDIFRGLEVVEHA 120 Query: 121 CSIGSLQMGEFAENVAGGVDTYTLRQPIGVCAGITPFNFPAMIPLWMFPMAIACGNTFVL 180 CSIG+LQMGEF+ENVAGGVDTYTLRQPIGVCAGITPFNFPAMIPLWMFPMAIACGNTFVL Sbjct: 121 CSIGTLQMGEFSENVAGGVDTYTLRQPIGVCAGITPFNFPAMIPLWMFPMAIACGNTFVL 180 Query: 181 KPSEQDPMSTMLLVELAIEAGIPPGVLNVVHGGKDVVDALCTHKDIKAVSFVGSTAVGTH 240 KPSEQDP+STMLLVELA+EAG+P GVLNVVHGGKDVVDALCTHKDIKAVSFVGSTAVGTH Sbjct: 181 KPSEQDPLSTMLLVELALEAGVPAGVLNVVHGGKDVVDALCTHKDIKAVSFVGSTAVGTH 240 Query: 241 VYDLAGKHGKRVQSMMGAKNHAVVLPDANREQALNALVGAGFGAAGQRCMATSVVVLVGA 300 VYDLAGKHGKRVQSMMGAKNHAVVLPDANRE LNALVGAGFGAAGQRCMATSVVVLVGA Sbjct: 241 VYDLAGKHGKRVQSMMGAKNHAVVLPDANREHTLNALVGAGFGAAGQRCMATSVVVLVGA 300 Query: 301 AKQWLPDLKALAQKLKVNAGSEPGTDVGPVISKRAKARILDLIESGIKEGAKLELDGRDI 360 +KQWLPDLKALAQKLKVNAGSE GTDVGPVISKRAKARIL+LIESG+KEGAKLELDGRDI Sbjct: 301 SKQWLPDLKALAQKLKVNAGSEAGTDVGPVISKRAKARILELIESGVKEGAKLELDGRDI 360 Query: 361 SVPGYEKGNFVGPTLFSGVTPEMQIYTQEIFGPVLVVLEVDTLDQAIALVNANPFGNGTG 420 VPG+E+GNFVGPTLFSGVTP MQIYTQEIFGPVLVVLEV TLD+AIALVNANPFGNGTG Sbjct: 361 KVPGFEQGNFVGPTLFSGVTPSMQIYTQEIFGPVLVVLEVATLDEAIALVNANPFGNGTG 420 Query: 421 LFTQSGAAARKFQTEIDVGQVGINIPIPVPVPFFSFTGSRGSKLGDLGPYGKQVVQFYTQ 480 LFTQSGAAARKFQ+EIDVGQVGINIPIPVPVPFFSFTGSRGSKLGDLGPYGKQVVQFYTQ Sbjct: 421 LFTQSGAAARKFQSEIDVGQVGINIPIPVPVPFFSFTGSRGSKLGDLGPYGKQVVQFYTQ 480 Query: 481 TKTVTARWFDDDSVNDGVNTTIHLR 505 TKTVT+RWFDDD+VNDGVNTTI+LR Sbjct: 481 TKTVTSRWFDDDTVNDGVNTTINLR 505 Lambda K H 0.319 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 923 Number of extensions: 22 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 505 Length of database: 505 Length adjustment: 34 Effective length of query: 471 Effective length of database: 471 Effective search space: 221841 Effective search space used: 221841 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.6 bits)
Align candidate GFF4637 PS417_23725 (methylmalonate-semialdehyde dehydrogenase)
to HMM TIGR01722 (mmsA: methylmalonate-semialdehyde dehydrogenase (acylating) (EC 1.2.1.27))
../bin/blast/fastacmd -i /tmp/list.2237.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.2237.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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