Align malonate-semialdehyde dehydrogenase (EC 1.2.1.15); malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18); methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) (characterized)
to candidate GFF640 PS417_03250 methylmalonate-semialdehyde dehydrogenase
Query= BRENDA::A0A081YAY7 (498 letters) >FitnessBrowser__WCS417:GFF640 Length = 498 Score = 911 bits (2354), Expect = 0.0 Identities = 445/498 (89%), Positives = 471/498 (94%) Query: 1 MTLIKHLIGGELIADTGRTADVFNPSTGEAVRKVPLADRETMQQAIDAAKAAFPAWRNTP 60 M+LI+HLI GEL+ D+GR+ADV+NPSTG+ + +VPLA RET+QQAID+AKAAFPAWRNTP Sbjct: 1 MSLIQHLINGELVNDSGRSADVYNPSTGQVIHQVPLASRETIQQAIDSAKAAFPAWRNTP 60 Query: 61 PAKRAQVLFRFKQLLEANEERIVKLISEEHGKTIEDAAGELKRGIENVEYATAAPEILKG 120 AKRAQV+FRFKQLLE NE RI +LISEEHGKT+EDAAGELKRGIENVEYA +APEILKG Sbjct: 61 AAKRAQVMFRFKQLLEQNEARISQLISEEHGKTLEDAAGELKRGIENVEYACSAPEILKG 120 Query: 121 EYSRNVGPNIDAWSDFQPIGVVAGITPFNFPAMVPLWMYPLAIACGNTFILKPSERDPSS 180 EYSRNVGPNIDAWSDFQP+GVVAGITPFNFPAMVPLWMYPLAI CGN FILKPSERDPSS Sbjct: 121 EYSRNVGPNIDAWSDFQPLGVVAGITPFNFPAMVPLWMYPLAIVCGNCFILKPSERDPSS 180 Query: 181 TLLIAELFHEAGLPKGVLNVVHGDKGAVDALIEAPEVKALSFVGSTPIAEYIYSEGTKRG 240 TLLIA+L EAGLPKGVL+VVHGDKGAVDALIEAPEVKALSFVGSTPIAEYIYSE TKRG Sbjct: 181 TLLIAQLLQEAGLPKGVLSVVHGDKGAVDALIEAPEVKALSFVGSTPIAEYIYSEATKRG 240 Query: 241 KRVQALGGAKNHAVLMPDADLDNAVSALMGAAYGSCGERCMAISVAVCVGDQIADALVQK 300 KRVQALGGAKNHAVLMPDADLDNAVSALMGAAYGSCGERCMAISVAVCVGDQ+ADAL+ K Sbjct: 241 KRVQALGGAKNHAVLMPDADLDNAVSALMGAAYGSCGERCMAISVAVCVGDQVADALIAK 300 Query: 301 LVPQIKGLKIGAGTSCGLDMGPLVTGAARDKVTGYIDTGVAQGAELVVDGRGYKVAGHEN 360 LVPQ+K LKIGAGTSCGLDMGPLVTG ARDKV+GYID GVA GAELVVDGRG VAGHE Sbjct: 301 LVPQVKALKIGAGTSCGLDMGPLVTGQARDKVSGYIDDGVAAGAELVVDGRGLSVAGHEE 360 Query: 361 GFFLGGTLFDRVTPEMTIYKEEIFGPVLCIVRVNSLEEAMQLINDHEYGNGTCIFTRDGE 420 GFFLGG+LFDRVTPEM IYKEEIFGPVLC+VRVNSLE AMQLINDHEYGNGTCIFTRDGE Sbjct: 361 GFFLGGSLFDRVTPEMRIYKEEIFGPVLCVVRVNSLEAAMQLINDHEYGNGTCIFTRDGE 420 Query: 421 AARLFCDEIEVGMVGVNVPLPVPVAYHSFGGWKRSLFGDLHAYGPDGVRFYTKRKAITQR 480 AARLFCDEIEVGMVGVNVPLPVPVAYHSFGGWKRSLFGDLHAYGPDGVRFYT+RKAITQR Sbjct: 421 AARLFCDEIEVGMVGVNVPLPVPVAYHSFGGWKRSLFGDLHAYGPDGVRFYTRRKAITQR 480 Query: 481 WPQRKSHEAAQFAFPSNS 498 WPQR SHEA+QFAFPS S Sbjct: 481 WPQRASHEASQFAFPSLS 498 Lambda K H 0.319 0.137 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 918 Number of extensions: 18 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 498 Length of database: 498 Length adjustment: 34 Effective length of query: 464 Effective length of database: 464 Effective search space: 215296 Effective search space used: 215296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.6 bits)
Align candidate GFF640 PS417_03250 (methylmalonate-semialdehyde dehydrogenase)
to HMM TIGR01722 (mmsA: methylmalonate-semialdehyde dehydrogenase (acylating) (EC 1.2.1.27))
../bin/blast/fastacmd -i /tmp/list.11121.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.11121.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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