Align Xylulose kinase (EC 2.7.1.17) (characterized)
to candidate GFF2488 PS417_12690 xylulose kinase
Query= reanno::pseudo6_N2E2:Pf6N2E2_805 (495 letters) >FitnessBrowser__WCS417:GFF2488 Length = 493 Score = 813 bits (2099), Expect = 0.0 Identities = 402/495 (81%), Positives = 440/495 (88%), Gaps = 2/495 (0%) Query: 1 MANQQLFLGIDCGTQGTKALILDATSGQVLGLGAAAHSMISGANGRREQDTQQWLDAFTQ 60 M Q LFLGIDCGTQGTKA++LDA+SG+VLGLGAAAH++ISGANGRREQ TQ+WLDAFT+ Sbjct: 1 MTQQNLFLGIDCGTQGTKAIVLDASSGKVLGLGAAAHTLISGANGRREQHTQEWLDAFTE 60 Query: 61 ATHQALAAAGVDGQAILGIGVSGQQHGLVLLDDQGQVLRPAKLWCDTETTPENDRLLAHL 120 ATH+AL AGVDGQ ILGIGVSGQQHGLVLLDDQG+VLRPAKLWCDTET PEN+RLL HL Sbjct: 61 ATHRALQQAGVDGQDILGIGVSGQQHGLVLLDDQGRVLRPAKLWCDTETAPENERLLQHL 120 Query: 121 GGEDGSLERLGVVIAPGYTVSKLLWTREQHPQVFERIASVLLPHDFLNYWLTGRHCSEYG 180 GGE GSLERLGV IAPGYTVSKLLWTREQHP +F RI +LLPHD+LNYWLTGR +EYG Sbjct: 121 GGESGSLERLGVAIAPGYTVSKLLWTREQHPDIFARITHILLPHDYLNYWLTGRAVAEYG 180 Query: 181 DASGTGYFNVRTRQWDVQLLQHIDPSARLQAALPELIEAHQPVGRILPAIAAHLGINPEA 240 DASGTGYFNVRTR+WDV LL+HIDPS RL+ ALP+LIEA Q VG ILPAIA LGINP A Sbjct: 181 DASGTGYFNVRTREWDVALLKHIDPSGRLENALPQLIEADQSVGTILPAIAERLGINPNA 240 Query: 241 VVASGGGDNMMGAIGTGNIQPGVITMSLGSSGTVYAYAAEPAVSPQPSVATFCSSSGGWL 300 +V+SGGGDNMMGAIGTGNI PGVITMSLGSSGTVYA+A +P+VSPQ SVATFCSSSGGWL Sbjct: 241 IVSSGGGDNMMGAIGTGNIAPGVITMSLGSSGTVYAFADQPSVSPQASVATFCSSSGGWL 300 Query: 301 PLICTMNLTNATGAIRELLDLDIDAFNALVAKAPIGAEGVCMLPFLNGERVPALPHATGS 360 PLICTMNLTNATG IREL DLD+ AFNALV +APIGA+GV MLPFLNGERVPALPHATGS Sbjct: 301 PLICTMNLTNATGVIRELFDLDLTAFNALVEQAPIGADGVSMLPFLNGERVPALPHATGS 360 Query: 361 LLGLTTTNLTRANLCRAVVEGTTFGLRYGLDLLRANGLQAQSIRLIGGGSKSAQWRQIVA 420 L GLT TNLTRANLCRAVVEGTTFGLRYGLDLLR GLQ+QSIRLIGGGSKS WRQ+VA Sbjct: 361 LHGLTMTNLTRANLCRAVVEGTTFGLRYGLDLLRQTGLQSQSIRLIGGGSKSPIWRQMVA 420 Query: 421 DTMDTTVICTEQSEAAALGAAIQAAWCHSGSQTGLAELCERCVKLDPSSETRPIAAHVAA 480 D M+T V+CTEQSEAAALGAAIQAAW SG LA LC++CV +DP+S T P+AA V+A Sbjct: 421 DIMNTEVVCTEQSEAAALGAAIQAAWSQSGE--SLASLCDKCVSVDPASRTLPVAASVSA 478 Query: 481 SQQAYERYRQHVATL 495 QQAYERY+Q VATL Sbjct: 479 YQQAYERYQQLVATL 493 Lambda K H 0.318 0.133 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 901 Number of extensions: 34 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 495 Length of database: 493 Length adjustment: 34 Effective length of query: 461 Effective length of database: 459 Effective search space: 211599 Effective search space used: 211599 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.6 bits)
Align candidate GFF2488 PS417_12690 (xylulose kinase)
to HMM TIGR01312 (xylB: xylulokinase (EC 2.7.1.17))
../bin/blast/fastacmd -i /tmp/list.23169.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.23169.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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