Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 (characterized)
to candidate Ac3H11_788 Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
Query= SwissProt::P22008 (273 letters) >FitnessBrowser__acidovorax_3H11:Ac3H11_788 Length = 281 Score = 211 bits (537), Expect = 1e-59 Identities = 120/269 (44%), Positives = 165/269 (61%), Gaps = 2/269 (0%) Query: 4 PRIAFIGAGNMAASLIGGLRAQGVPAAQIRASDPGAEQRAKIAGEFAIDVVESNAEAVAD 63 P IAFIG GNMA+++IGGL QG PA+QI +P A R + F + A+ Sbjct: 14 PTIAFIGGGNMASAIIGGLIGQGHPASQIEVVEPYAPTREALLKNFGLTAQPEAGPALQR 73 Query: 64 ADVVVLSVKPQAMKAVCQALAPALKPEQLIVSIAAGIPCASLEAWLGQPRPVVRCMPNTP 123 A +VV +VKPQ K A A A P+ L +S+AAGI S+ WLG R VVR MPNTP Sbjct: 74 ASIVVWAVKPQTFKDAA-AQARAHTPQALHLSVAAGIRSDSIAQWLGTER-VVRTMPNTP 131 Query: 124 ALLRQGASGLYANAQVSAAQCEQAGQLLSAVGIALWLDDEAQIDAVTAVSGSGPAYFFLL 183 AL+ +G S +YA V+ A+ + ++++ G LW++ E Q+DAVTA+SGSGPAY F Sbjct: 132 ALVGKGMSAIYARPAVTPAERQSVEAIMASTGEFLWVESETQLDAVTALSGSGPAYVFYF 191 Query: 184 MQAMTDAGEKLGLSRETASRLTLQTALGAAQMALSSEVEPAELRRRVTSPNGTTEAAIKS 243 ++AM AG +GLS A +L + T +GA+++A S PA LR RVTS GTT AA++S Sbjct: 192 LEAMARAGVGMGLSDAQAHQLAVGTFVGASELARRSHEPPAVLRERVTSKGGTTYAALQS 251 Query: 244 FQANGFEALVEQALNAASQRSAELAEQLG 272 +A+G E A+ AA +R+ EL + G Sbjct: 252 MEASGVSQAFEAAMRAAEKRANELGNEFG 280 Lambda K H 0.315 0.127 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 219 Number of extensions: 9 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 273 Length of database: 281 Length adjustment: 25 Effective length of query: 248 Effective length of database: 256 Effective search space: 63488 Effective search space used: 63488 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 47 (22.7 bits)
Align candidate Ac3H11_788 (Pyrroline-5-carboxylate reductase (EC 1.5.1.2))
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))
../bin/blast/fastacmd -i /tmp/list.3481.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.3481.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.