Align 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (characterized)
to candidate Ac3H11_2339 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Query= BRENDA::B7WZA5 (303 letters) >FitnessBrowser__acidovorax_3H11:Ac3H11_2339 Length = 303 Score = 536 bits (1382), Expect = e-157 Identities = 264/303 (87%), Positives = 278/303 (91%) Query: 1 MTPQDLKDVMSSGLLSFPVTDFDAQGNFNAKGYAARLEWLAPYGASALFAAGGTGEYFSL 60 MTPQDLK +M SGLLSFP+TDFD QGNF K Y RLEWLAPYGASALFAAGGTGEYFSL Sbjct: 1 MTPQDLKTIMGSGLLSFPITDFDEQGNFRPKTYIERLEWLAPYGASALFAAGGTGEYFSL 60 Query: 61 YGEEYGQIIKTAVDTCRGKVPIIAGAGGPTRTAIAHAQEAERLGAHGILLLPHYLTEAGQ 120 G EY ++IKTAVDTCRGKVPIIAGAGGPTRTAIAHAQEAERLGAHGILLLPHYLTEAGQ Sbjct: 61 SGPEYSEVIKTAVDTCRGKVPIIAGAGGPTRTAIAHAQEAERLGAHGILLLPHYLTEAGQ 120 Query: 121 EGLIAHVEQVCKSVKFGVIVYNRDRTRFTPESLAILAERCPNLVGFKDGMGNIETMSSIF 180 EGLI HV QVC SVKFGVIVYNRDRT+ T ESLAILAERCPNL+GFKDG+GNIETMSSI+ Sbjct: 121 EGLIEHVAQVCNSVKFGVIVYNRDRTKLTAESLAILAERCPNLIGFKDGVGNIETMSSIY 180 Query: 181 MKMGDRFAYLGGLPTAEVYAAAYKALGTPVYSSAVFNFIPRTAMAFYEAVRTDDMATQHK 240 MKMGDRF+YLGGLPTAEVYAAAYKALGTPVYSSAVFNFIP+TAM FY+AV DD+ATQHK Sbjct: 181 MKMGDRFSYLGGLPTAEVYAAAYKALGTPVYSSAVFNFIPKTAMDFYKAVAADDIATQHK 240 Query: 241 LLKEFFMPYLKIRNRVEGYGVSIIKAGAKLVGHDAGPVRAPLTDLKPAEMEELKVLIDKL 300 LLKEFFMPYL IRNRVEGYGVSIIKAGAK+VGHD GPVRAPLTDLKP E+EEL LI KL Sbjct: 241 LLKEFFMPYLAIRNRVEGYGVSIIKAGAKIVGHDGGPVRAPLTDLKPHEVEELAALIKKL 300 Query: 301 GPQ 303 GPQ Sbjct: 301 GPQ 303 Lambda K H 0.320 0.138 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 447 Number of extensions: 9 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 303 Length of database: 303 Length adjustment: 27 Effective length of query: 276 Effective length of database: 276 Effective search space: 76176 Effective search space used: 76176 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate Ac3H11_2339 (5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41))
to HMM TIGR03249 (kdgD: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41))
../bin/blast/fastacmd -i /tmp/list.31378.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.31378.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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