Align Beta-ketothiolase BktB; Acetyl-CoA acetyltransferase; Acetyl-CoA acyltransferase; EC 2.3.1.16; EC 2.3.1.9 (characterized)
to candidate Ac3H11_178 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Query= SwissProt::Q0KBP1 (394 letters) >FitnessBrowser__acidovorax_3H11:Ac3H11_178 Length = 394 Score = 608 bits (1567), Expect = e-178 Identities = 305/394 (77%), Positives = 338/394 (85%) Query: 1 MTREVVVVSGVRTAIGTFGGSLKDVAPAELGALVVREALARAQVSGDDVGHVVFGNVIQT 60 MTREVVVVS VRTAIGTFGGSLKD+AP +LGALVV+E+LARA V G DVGHVVFG+V+ T Sbjct: 1 MTREVVVVSAVRTAIGTFGGSLKDIAPTDLGALVVKESLARASVEGKDVGHVVFGHVVNT 60 Query: 61 EPRDMYLGRVAAVNGGVTINAPALTVNRLCGSGLQAIVSAAQTILLGDTDVAIGGGAESM 120 EP+DMYL RVAA+NGG PA VNRLCGSGLQAIVSAAQ I LGD DV IG GAE M Sbjct: 61 EPKDMYLSRVAAINGGCAEGTPAFNVNRLCGSGLQAIVSAAQAIQLGDADVTIGAGAEVM 120 Query: 121 SRAPYLAPAARWGARMGDAGLVDMMLGALHDPFHRIHMGVTAENVAKEYDISRAQQDEAA 180 SRAP+ + RWGARMGD +VDMM+GALHDPFH IHMGVTAEN+A ++ ISR QD+ A Sbjct: 121 SRAPFASLNMRWGARMGDTKMVDMMIGALHDPFHTIHMGVTAENIAAKWGISREDQDKLA 180 Query: 181 LESHRRASAAIKAGYFKDQIVPVVSKGRKGDVTFDTDEHVRHDATIDDMTKLRPVFVKEN 240 +ESH RA A AGYFKDQIVPV K +KGDV + TDEH R AT+DD KL+PVFVKEN Sbjct: 181 VESHNRAERATAAGYFKDQIVPVTLKSKKGDVQYATDEHFRPGATLDDFAKLKPVFVKEN 240 Query: 241 GTVTAGNASGLNDAAAAVVMMERAEAERRGLKPLARLVSYGHAGVDPKAMGIGPVPATKI 300 GTVTAGNASG+NDAAAAVV+M+ A A+ RG KPLARLV+Y HAGVDPK MGIGPVPAT++ Sbjct: 241 GTVTAGNASGINDAAAAVVLMDAAAAKARGAKPLARLVAYAHAGVDPKYMGIGPVPATQL 300 Query: 301 ALERAGLQVSDLDVIEANEAFAAQACAVTKALGLDPAKVNPNGSGISLGHPIGATGALIT 360 AL++AGL V+DLDVIEANEAFAAQACAVTK LGLDPAKVNPNGSGISLGHPIGATGALIT Sbjct: 301 ALKKAGLTVADLDVIEANEAFAAQACAVTKDLGLDPAKVNPNGSGISLGHPIGATGALIT 360 Query: 361 VKALHELNRVQGRYALVTMCIGGGQGIAAIFERI 394 VKA+HEL RVQGRYALVTMCIGGGQGIAAIFER+ Sbjct: 361 VKAIHELQRVQGRYALVTMCIGGGQGIAAIFERL 394 Lambda K H 0.318 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 569 Number of extensions: 7 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 394 Length of database: 394 Length adjustment: 31 Effective length of query: 363 Effective length of database: 363 Effective search space: 131769 Effective search space used: 131769 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate Ac3H11_178 (3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9))
to HMM TIGR01930 (acetyl-CoA C-acyltransferase (EC 2.3.1.16))
../bin/blast/fastacmd -i /tmp/list.23924.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.23924.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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