Align triose-phosphate isomerase (EC 5.3.1.1) (characterized)
to candidate Ac3H11_1454 Triosephosphate isomerase (EC 5.3.1.1)
Query= BRENDA::Q10657 (247 letters) >FitnessBrowser__acidovorax_3H11:Ac3H11_1454 Length = 249 Score = 223 bits (568), Expect = 3e-63 Identities = 128/247 (51%), Positives = 166/247 (67%), Gaps = 7/247 (2%) Query: 3 RKFFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVVVAPPAPYLAYAKSKLKAG--VLV 60 +K + GNWKMNG A+ + ++ L A + + DV VA PAPYLA ++ L AG V V Sbjct: 4 KKKLIAGNWKMNGSLAANEVLLKALIAGLGDVTCDVAVAVPAPYLAQVQA-LTAGTAVAV 62 Query: 61 AAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGI 120 AAQ+ + GA+TGE+S AM+KD G+ + ++GHSERR GE+D +AEK AL AG+ Sbjct: 63 AAQDVSRYESGAYTGEVSVAMLKDFGVRYALVGHSERRQYHGETDVAVAEKAQRALAAGV 122 Query: 121 KVVFCIGEKLEEREAGHTKDVNFRQLQAIVD-KGVSWENIVIAYEPVWAIGTGKTASGEQ 179 + C+GE LEEREAG T+ V RQL A++ G IV+AYEPVWAIGTG+TAS EQ Sbjct: 123 TPIVCVGETLEEREAGQTEAVVKRQLAAVIHLNGHCISEIVVAYEPVWAIGTGRTASPEQ 182 Query: 180 AQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASLK-PD 238 AQ VH +RA L + AD R++YGGS+ A NAA+L +PDIDG LVGGASLK D Sbjct: 183 AQAVHAVLRAQL--AAASEHADRIRLLYGGSMNAGNAAQLLAQPDIDGGLVGGASLKAAD 240 Query: 239 FVKIINA 245 F++II A Sbjct: 241 FLQIIAA 247 Lambda K H 0.317 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 187 Number of extensions: 11 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 247 Length of database: 249 Length adjustment: 24 Effective length of query: 223 Effective length of database: 225 Effective search space: 50175 Effective search space used: 50175 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 46 (22.3 bits)
Align candidate Ac3H11_1454 (Triosephosphate isomerase (EC 5.3.1.1))
to HMM TIGR00419 (tpiA: triose-phosphate isomerase (EC 5.3.1.1))
../bin/blast/fastacmd -i /tmp/list.10202.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10202.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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