Align Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 (characterized)
to candidate Ac3H11_2082 Phosphogluconate dehydratase (EC 4.2.1.12)
Query= SwissProt::P21909 (607 letters) >FitnessBrowser__acidovorax_3H11:Ac3H11_2082 Length = 589 Score = 661 bits (1706), Expect = 0.0 Identities = 331/598 (55%), Positives = 436/598 (72%), Gaps = 16/598 (2%) Query: 4 LHSTVEKVTARVIERSRETRKAYLDLIQYEREKGVDRPNLSCSNLAHGFAAMNG-DKPAL 62 +H V +VT R+++RS +TR AYL + + + + C+NLAH +AA+ G +K + Sbjct: 1 MHPVVARVTERIVQRSADTRGAYLAGVDAMIARKPAQDRMGCANLAHAYAALPGSEKFKV 60 Query: 63 RDFNRMNIGVVTSYNDMLSAHEPYYRYPEQMKVFAREVGATVQVAGGVPAMCDGVTQGQP 122 NIGVVT+YNDMLSAH+PY YP ++ A + GATVQVAGGVPAMCDGVTQG P Sbjct: 61 TVEKAPNIGVVTAYNDMLSAHQPYQSYPAVLRDEAAKQGATVQVAGGVPAMCDGVTQGTP 120 Query: 123 GMEESLFSRDVIALATSVSLSHGMFEGAALLGICDKIVPGLLMGALRFGHLPTILVPSGP 182 GME SLFSRD IA+AT+V+LSH +F+GA LLG+CDKIVPGLL+GAL +GHLP + VP+GP Sbjct: 121 GMELSLFSRDAIAMATAVALSHDVFDGALLLGVCDKIVPGLLIGALHYGHLPCVFVPAGP 180 Query: 183 MTTGIPNKEKIRIRQLYAQGKIGQKELLDMEAACYHAEGTCTFYGTANTNQMVMEVLGLH 242 M TG+ NK+K ++R+ YAQG +G+ ELL E+A YH+ GTCTFYGTAN+NQM++E +GLH Sbjct: 181 MGTGLSNKDKAKVREQYAQGLVGRDELLQAESAAYHSPGTCTFYGTANSNQMLLEAMGLH 240 Query: 243 MPGSAFVTPGTPLRQALTRAAVHRVAELGWKGDDYRPLGKIIDEKSIVNAIVGLLATGGS 302 +PG+AF +PGT R+A TR A+ V ++G + + P+GK++DE+ IVNA+ LLATGGS Sbjct: 241 VPGAAFESPGTEAREAFTRQALRTVLDIGKRSKRFTPIGKLVDERCIVNAMAALLATGGS 300 Query: 303 TNHTMHIPAIARAAGVIVNWNDFHDLSEVVPLIARIYPNGPRDINEFQNAGGMAYVIKEL 362 TNH +H AIAR+AG++++W DF +LS VVPL+AR+YPNG D+N+FQ AGG ++++EL Sbjct: 301 TNHLIHWVAIARSAGILIDWTDFDELSSVVPLLARVYPNGDADVNQFQAAGGPPWILREL 360 Query: 363 LSANLLNRDVTTIAKGGIEEYAK-APALNDAGELVWKPAGEPGDDTILRPVSNPFAKDGG 421 L+ ++ DV ++ GGI + K APA++ GD ++LRPVS PF+ GG Sbjct: 361 LAGGFMHPDVMSVNVGGIADGGKSAPAVS-------------GDTSVLRPVSAPFSPTGG 407 Query: 422 LRLLEGNLGRAMYKASAVDPKFWTIEAPVRVFSDQDDVQKAFKAGELNKDVIVVVRFQGP 481 LRLL+G LGRA+ K SAV IEAP RVF Q+ + AF AG++N+D++ VVRFQGP Sbjct: 408 LRLLQGRLGRAVIKVSAVPEDRHIIEAPARVFDSQEALLAAFSAGDVNQDMVAVVRFQGP 467 Query: 482 RANGMPELHKLTPALGVLQDNGYKVALVTDGRMSGATGKVPVALHVSPEALGGGAIGKLR 541 +ANGMPELHKLTP L VLQ+ G+KVALVTDGRMSGA+GKVP A+HV+PEAL GG + K+R Sbjct: 468 QANGMPELHKLTPPLAVLQNQGFKVALVTDGRMSGASGKVPAAIHVTPEALAGGPLAKVR 527 Query: 542 DGDIVRISVEEGKLEALVPADEWNAR-PHAEKPAFRPGTGRELFDIFRQNAAKAEDGA 598 DGDIVR+ G L+ LV W AR P + G GRELF FR++A AE GA Sbjct: 528 DGDIVRVDAVAGTLDVLVDEATWAARTPSPYSAPAQTGFGRELFTNFRRHAGGAEQGA 585 Lambda K H 0.318 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1114 Number of extensions: 48 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 607 Length of database: 589 Length adjustment: 37 Effective length of query: 570 Effective length of database: 552 Effective search space: 314640 Effective search space used: 314640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (25.0 bits)
Align candidate Ac3H11_2082 (Phosphogluconate dehydratase (EC 4.2.1.12))
to HMM TIGR01196 (edd: phosphogluconate dehydratase (EC 4.2.1.12))
../bin/blast/fastacmd -i /tmp/list.2843.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.2843.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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